View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15426_low_11 (Length: 474)
Name: NF15426_low_11
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 1236063 - 1235609
Alignment:
| Q |
1 |
aatcaattagtgccatcaaaaaacccacatgaatttgaccaagttgaaatagttgtgaggtctatagaagaagataaaagcaacctcaacaacaataatc |
100 |
Q |
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| T |
1236063 |
aatcaattagtgccatcaaaaaacccacatgaatttgacccagttgaaatagttgtgaggtctatagaaaaagataaaagcaacctcaacaacaataatc |
1235964 |
T |
|
| Q |
101 |
agatggttaaggataatgaagattcacaaacagatgaacatgaacaacaaagtcaagaaaaatgaggaggggtaaaagaagttgcatgtaatgcctaaaa |
200 |
Q |
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| T |
1235963 |
agatggttaaggataatgaagattcacaaacagatgaacatgaacaacaaagtcaagaaaaatgaggaggggtaaaagaagttgcatgtaatgcctaaaa |
1235864 |
T |
|
| Q |
201 |
tatggagtatcaaattattattatatatcacactcctacatgttggtccaaaatgagcgtgacatcgttctagattgcccaaaaatgctaccagcggacc |
300 |
Q |
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| T |
1235863 |
tatggagtatcaaattattat---atatcacactcctacatgttggtccaaaatgagcgtgacatcgttctagattggccaaaaatgctaccagcggacc |
1235767 |
T |
|
| Q |
301 |
ctattttgattctccaactaaaatacatttgaagaccaaaatgaagaaaaagggaaacattttaaagaacagaaagtgtttaattcagtgaactcttagc |
400 |
Q |
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| T |
1235766 |
ctattttgattctccaactaaaatacatttgaagaccaaaatgaagaaaaagggaaacattttaaagaacagaaagtgtttaattcagtgaactcttagc |
1235667 |
T |
|
| Q |
401 |
tggacttgactctgttatatacaattataattttattaaactgcttagatttatatat |
458 |
Q |
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| T |
1235666 |
tggacttgactctgttatatacaattataattttgttaaactgcttagatttatatat |
1235609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 458
Target Start/End: Original strand, 628591 - 628702
Alignment:
| Q |
347 |
aaaaagggaaacattttaaagaacagaaagtgtttaattcagtgaactcttagctggacttgactctgttatatacaattataattttattaaactgctt |
446 |
Q |
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|||||||||||||||| |||| ||| | |||| ||||| ||| | ||||| || |||||| | ||||| ||||| ||| ||||||| |||||||||| |
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| T |
628591 |
aaaaagggaaacatttcaaaggacaaagggtgtctaattgggtggagccttagatgaacttgattgtgttagatacacttagaattttactaaactgctt |
628690 |
T |
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| Q |
447 |
agatttatatat |
458 |
Q |
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|| ||||||||| |
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| T |
628691 |
aggtttatatat |
628702 |
T |
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