View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15426_low_12 (Length: 470)

Name: NF15426_low_12
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15426_low_12
NF15426_low_12
[»] chr2 (4 HSPs)
chr2 (19-176)||(24845581-24845741)
chr2 (340-384)||(24845906-24845950)
chr2 (340-384)||(38260833-38260877)
chr2 (98-145)||(33084613-33084660)
[»] chr4 (11 HSPs)
chr4 (98-157)||(8358825-8358884)
chr4 (19-72)||(8355889-8355942)
chr4 (75-157)||(9576699-9576783)
chr4 (98-152)||(8417072-8417126)
chr4 (75-124)||(8355806-8355855)
chr4 (101-148)||(8035673-8035720)
chr4 (98-145)||(9138274-9138321)
chr4 (98-148)||(8411467-8411517)
chr4 (98-146)||(8041089-8041137)
chr4 (346-384)||(8354569-8354607)
chr4 (98-148)||(43144144-43144194)
[»] scaffold0016 (1 HSPs)
scaffold0016 (340-380)||(59594-59634)


Alignment Details
Target: chr2 (Bit Score: 147; Significance: 3e-77; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 24845581 - 24845741
Alignment:
Q  19 attttaccatctcgggtaggtctatttttcatcaactcctgttctccacatgcagagcttgtcatttgatggcaaaacatcaatcttcttaaaatggctg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24845581 attttaccatctcgggtaggtctatttttcatcaactcctgttctccacatgcagagcttgtcatttgatggcaaaacatcaatcttcttaaaatggctg 24845680  T
Q  119 caagtgctttccaatgtgaagattttgaaagttgataataaa---tgtgtgtgtgtcaaac 176  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  24845681 caagtgctttccaatgtgaagattttgaaagttgataataaattgtgtgtgtgtgtcaaac 24845741  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 384
Target Start/End: Original strand, 24845906 - 24845950
Alignment:
Q  340 aaagtttaaataaacatgaattatgtctctcgttttagactcttc 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  24845906 aaagtttaaataaacatgaattatgtctctcgttttagactcttc 24845950  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 38260877 - 38260833
Alignment:
Q  340 aaagtttaaataaacatgaattatgtctctcgttttagactcttc 384  Q
    |||||||||||||||||||||| || |||||||||||||||||||    
T  38260877 aaagtttaaataaacatgaattgtgcctctcgttttagactcttc 38260833  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 33084613 - 33084660
Alignment:
Q  98 tcaatcttcttaaaatggctgcaagtgctttccaatgtgaagattttg 145  Q
    ||||||||| ||| |||||||||||||||||||||||| |||||||||    
T  33084613 tcaatcttcctaagatggctgcaagtgctttccaatgtaaagattttg 33084660  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 8358884 - 8358825
Alignment:
Q  98 tcaatcttcttaaaatggctgcaagtgctttccaatgtgaagattttgaaagttgataat 157  Q
    |||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  8358884 tcaatcttcttaaaatggctgcaagtgcttgccaatgtcgagattttgaaagttgataat 8358825  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 8355942 - 8355889
Alignment:
Q  19 attttaccatctcgggtaggtctatttttcatcaactcctgttctccacatgca 72  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  8355942 attttaccatgtcgggtaggtctatttttcatcaactcctgttctccacttgca 8355889  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 157
Target Start/End: Complemental strand, 9576783 - 9576699
Alignment:
Q  75 gcttgtcatttgatggcaaaacatcaatcttctta--aaatggctgcaagtgctttccaatgtgaagattttgaaagttgataat 157  Q
    ||||||||| |||||| ||||| ||||||||||||  | |||||||||||||||| ||||||| |||||||||||| || |||||    
T  9576783 gcttgtcatatgatggaaaaacttcaatcttcttaggatatggctgcaagtgcttgccaatgtcaagattttgaaacttaataat 9576699  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 8417072 - 8417126
Alignment:
Q  98 tcaatcttcttaaaatggctgcaagtgctttccaatgtgaagattttgaaagttg 152  Q
    ||||||||||||| ||||||||||||| || ||||||| ||||||||||||||||    
T  8417072 tcaatcttcttaagatggctgcaagtgtttgccaatgtaaagattttgaaagttg 8417126  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 75 - 124
Target Start/End: Complemental strand, 8355855 - 8355806
Alignment:
Q  75 gcttgtcatttgatggcaaaacatcaatcttcttaaaatggctgcaagtg 124  Q
    ||||||||| |||||||||||||||||||||||||| |||||| ||||||    
T  8355855 gcttgtcatatgatggcaaaacatcaatcttcttaacatggctccaagtg 8355806  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 148
Target Start/End: Complemental strand, 8035720 - 8035673
Alignment:
Q  101 atcttcttaaaatggctgcaagtgctttccaatgtgaagattttgaaa 148  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||||||||    
T  8035720 atcttcttaaattggctgcaagtgcttgccaatgtaaagattttgaaa 8035673  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 9138321 - 9138274
Alignment:
Q  98 tcaatcttcttaaaatggctgcaagtgctttccaatgtgaagattttg 145  Q
    ||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  9138321 tcaatcttcttaagatggctgcaagtgcttgccaatgtcaagattttg 9138274  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 8411467 - 8411517
Alignment:
Q  98 tcaatcttcttaaaatggctgcaagtgctttccaatgtgaagattttgaaa 148  Q
    ||||||||| ||| |||||||||||||||| ||||||| ||||||||||||    
T  8411467 tcaatcttcgtaagatggctgcaagtgcttgccaatgtaaagattttgaaa 8411517  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 8041137 - 8041089
Alignment:
Q  98 tcaatcttcttaaaatggctgcaagtgctttccaatgtgaagattttga 146  Q
    ||||||||||||| |||||||||||||||  ||||||| ||||||||||    
T  8041137 tcaatcttcttaagatggctgcaagtgctggccaatgtaaagattttga 8041089  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 384
Target Start/End: Complemental strand, 8354607 - 8354569
Alignment:
Q  346 taaataaacatgaattatgtctctcgttttagactcttc 384  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  8354607 taaataaacacaaattatgtctctcgttttagactcttc 8354569  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 148
Target Start/End: Complemental strand, 43144194 - 43144144
Alignment:
Q  98 tcaatcttcttaaaatggctgcaagtgctttccaatgtgaagattttgaaa 148  Q
    |||| |||||||| |||||||||||||||| |||| || ||||||||||||    
T  43144194 tcaaccttcttaagatggctgcaagtgcttgccaacgtaaagattttgaaa 43144144  T

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Target: scaffold0016 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 380
Target Start/End: Complemental strand, 59634 - 59594
Alignment:
Q  340 aaagtttaaataaacatgaattatgtctctcgttttagact 380  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  59634 aaagtttaaataaacatgaattatgcctctcgttttagact 59594  T

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