View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15426_low_16 (Length: 427)
Name: NF15426_low_16
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_low_16 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 3340072 - 3339646
Alignment:
| Q |
1 |
aaatgaaatcaacatagttgttaattgatttttgagtgaatcaccaaatttattctttgcaattgtaggaaattgttaacttgtttttaaactatgtttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3340072 |
aaatgaaatcaacatagttgttaattgatttttgagtgaatcaccaaatttattctttgcaattgtaggaaattgttaacttgtttttaaactatgttta |
3339973 |
T |
|
| Q |
101 |
aaattctcttttaattttaaaattctcgtcacataaatctttgtcaaataatttcattgactaaattgatttgatcccttcgaaattatacgacaaaatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3339972 |
aaattctcttttaattttaaaattctcatcacataaatctttgtcaaatagtttcattgaataaattgatttgatcccttcgaaattatacgacaaaatt |
3339873 |
T |
|
| Q |
201 |
aatttgattcaaaagacattccaaatattaacaattttaaataggcttaaa-gcgaattttggtttaccttcattttgtattcatgagnnnnnnngacat |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3339872 |
aatttgattcaaaagacattccaaatattaacaattttaaataggcttaaaggcgaattttggtttaccttcattttgtattcatgagaaaaaaagacat |
3339773 |
T |
|
| Q |
300 |
attagtttggtaataaaatgaatctcataaagctatcagatgtgtatatctctctcgtagacaataaatagagtacggataataatacttgacacgacaa |
399 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||| ||| |||||||||||| |
|
|
| T |
3339772 |
a-tagtttggtgataaaatgaatctcataaagctatcacatgtgtatatctctctcgtagacaataaatagagtaaggttaatgatagttgacacgacaa |
3339674 |
T |
|
| Q |
400 |
aataggtgcatgactcatagcacgacat |
427 |
Q |
| |
|
|||| ||||||||||||||||||||||| |
|
|
| T |
3339673 |
aataagtgcatgactcatagcacgacat |
3339646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University