View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15426_low_18 (Length: 410)

Name: NF15426_low_18
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15426_low_18
NF15426_low_18
[»] chr3 (11 HSPs)
chr3 (161-395)||(35870238-35870472)
chr3 (161-394)||(48266163-48266393)
chr3 (161-363)||(26215211-26215414)
chr3 (164-290)||(52349726-52349852)
chr3 (11-156)||(35871149-35871294)
chr3 (11-156)||(48267051-48267196)
chr3 (11-156)||(52350540-52350685)
chr3 (204-259)||(5884423-5884478)
chr3 (204-259)||(54945777-54945832)
chr3 (358-395)||(10176713-10176750)
chr3 (11-115)||(54945229-54945333)
[»] chr7 (10 HSPs)
chr7 (161-393)||(47233835-47234066)
chr7 (161-360)||(44393597-44393797)
chr7 (161-290)||(25419588-25419717)
chr7 (161-290)||(39066883-39067012)
chr7 (161-290)||(5768077-5768206)
chr7 (11-156)||(25418758-25418903)
chr7 (11-156)||(47233012-47233156)
chr7 (204-259)||(47932975-47933030)
chr7 (11-115)||(47932427-47932531)
chr7 (112-156)||(44394471-44394515)
[»] chr8 (13 HSPs)
chr8 (161-395)||(8150504-8150738)
chr8 (161-387)||(10186257-10186483)
chr8 (161-387)||(4138220-4138453)
chr8 (161-360)||(20171887-20172087)
chr8 (11-156)||(28843729-28843874)
chr8 (14-156)||(918180-918322)
chr8 (215-363)||(11428184-11428333)
chr8 (11-109)||(10187167-10187265)
chr8 (11-109)||(4139097-4139195)
chr8 (161-211)||(918968-919018)
chr8 (76-109)||(11427459-11427492)
chr8 (350-395)||(14597489-14597534)
chr8 (112-156)||(20172760-20172804)
[»] chr4 (23 HSPs)
chr4 (161-395)||(53830518-53830756)
chr4 (161-387)||(21802799-21803025)
chr4 (161-395)||(34737812-34738046)
chr4 (161-395)||(21632782-21633017)
chr4 (161-360)||(5430639-5430842)
chr4 (164-342)||(2500660-2500838)
chr4 (161-290)||(2505014-2505143)
chr4 (25-156)||(34737014-34737145)
chr4 (161-287)||(46092306-46092432)
chr4 (161-287)||(46134831-46134957)
chr4 (11-156)||(2504183-2504328)
chr4 (161-322)||(20036251-20036412)
chr4 (11-152)||(46093116-46093257)
chr4 (11-113)||(2499943-2500045)
chr4 (11-109)||(53829732-53829830)
chr4 (11-134)||(20037079-20037200)
chr4 (11-109)||(21803712-21803810)
chr4 (11-109)||(21631997-21632095)
chr4 (350-395)||(27256595-27256640)
chr4 (204-259)||(43943465-43943520)
chr4 (350-395)||(51868315-51868360)
chr4 (76-109)||(5431528-5431561)
chr4 (112-156)||(53829794-53829838)
[»] chr5 (6 HSPs)
chr5 (161-395)||(21605080-21605313)
chr5 (161-395)||(37302001-37302235)
chr5 (9-156)||(37301100-37301247)
chr5 (161-290)||(36991043-36991172)
chr5 (11-156)||(21604317-21604464)
chr5 (11-152)||(36991859-36992000)
[»] chr2 (13 HSPs)
chr2 (161-395)||(41646721-41646953)
chr2 (161-290)||(7574104-7574233)
chr2 (161-290)||(16668699-16668828)
chr2 (11-156)||(7573274-7573419)
chr2 (11-156)||(16667869-16668014)
chr2 (11-156)||(41645890-41646035)
chr2 (14-156)||(43564925-43565067)
chr2 (14-156)||(29456134-29456275)
chr2 (161-211)||(43564238-43564288)
chr2 (161-211)||(29455448-29455498)
chr2 (348-395)||(37904075-37904122)
chr2 (112-156)||(5968165-5968209)
chr2 (76-109)||(5968168-5968201)
[»] scaffold0516 (1 HSPs)
scaffold0516 (161-395)||(3141-3376)
[»] chr1 (8 HSPs)
chr1 (161-359)||(22912541-22912739)
chr1 (161-290)||(13786229-13786358)
chr1 (161-363)||(23726038-23726239)
chr1 (161-290)||(25807785-25807914)
chr1 (11-156)||(13787043-13787188)
chr1 (11-156)||(25806954-25807099)
chr1 (14-156)||(22911841-22911983)
chr1 (11-155)||(39624248-39624392)
[»] chr6 (9 HSPs)
chr6 (161-290)||(13433466-13433595)
chr6 (11-156)||(13432636-13432781)
chr6 (11-155)||(18883359-18883503)
chr6 (204-259)||(16857235-16857290)
chr6 (74-109)||(16711405-16711440)
chr6 (204-259)||(26615320-26615377)
chr6 (38-108)||(26720593-26720663)
chr6 (204-259)||(26721248-26721305)
chr6 (161-194)||(16712122-16712155)
[»] scaffold0182 (1 HSPs)
scaffold0182 (204-259)||(10171-10226)
[»] scaffold0316 (1 HSPs)
scaffold0316 (353-395)||(5480-5522)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 161 - 395
Target Start/End: Complemental strand, 35870472 - 35870238
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |     
35870472 atgaataattttaaaatgtaacctctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagttttcgc 35870373  T
261 aactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttagaaaa 360  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
35870372 aactgatggaaaatgaaagatagatagtaaggaatgactagtaaagaatcaagaagaaaagatagccacatggcataagtatgagagattagttagaaag 35870273  T
361 gggggcattggtaaggtgacacataggaaaaatgt 395  Q
    |||||||||||||||||||||||||| ||||||||    
35870272 gggggcattggtaaggtgacacatagaaaaaatgt 35870238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 161 - 394
Target Start/End: Complemental strand, 48266393 - 48266163
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||     
48266393 atgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagt-aagtaaatggagagtttttgc 48266295  T
261 aactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttagaaaa 360  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||  |||||||||||||||     
48266294 aactgatggaaaatgaaagatagatagtaaggaatgactagtaaagaatcaagaagaaaagatagccacatgacataagtat--gagattagttagaaag 48266197  T
361 gggggcattggtaaggtgacacataggaaaaatg 394  Q
    |||||||| | |||||||||||||| ||||||||    
48266196 gggggcatagataaggtgacacataagaaaaatg 48266163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 161 - 363
Target Start/End: Complemental strand, 26215414 - 26215211
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||||||||||||  ||||||| |||||||||||||  ||||||||||||||||| ||||||||||||||||||||| ||||||      
26215414 atgaataattttaaaatgtaacccctcgctattaataaaatggattataacacattcattgtgtaacttccatgaagtgaagtaaatggagagtttttcc 26215315  T
261 aactgatgggaaatgaaaga-tagatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttagaaa 359  Q
    || |||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||    
26215314 aattgatggaaaatgaaagattagatagtaaggaatggctagcaaagaatcaagaacaaaagagagccacatggcataagtatgagagattagttacaaa 26215215  T
360 aggg 363  Q
    ||||    
26215214 aggg 26215211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 164 - 290
Target Start/End: Complemental strand, 52349852 - 52349726
Alignment:
164 aataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgtaac 263  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
52349852 aataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttgtaac 52349753  T
264 tgatgggaaatgaaagatagatagtaa 290  Q
    |||||| ||||||||||||||||||||    
52349752 tgatggaaaatgaaagatagatagtaa 52349726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 35871294 - 35871149
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||    
35871294 atcatcaaaacatgattttgactctccaatttcacgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggc 35871195  T
111 cttgaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    |||||||||||||| ||||||||| |||||||  ||||||||||||    
35871194 cttgaatagatgtgtgcttctacaattagttacctaggatacttga 35871149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 48267196 - 48267051
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||    
48267196 atcatcaaaacatgattttgactctccaatttcacgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggc 48267097  T
111 cttgaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    |||||||||||||| ||||||||| |||||||  ||||||||||||    
48267096 cttgaatagatgtgtgcttctacaattagttacctaggatacttga 48267051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 52350685 - 52350540
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||| ||||||| | |||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||    
52350685 atcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggc 52350586  T
111 cttgaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    |||||||||||||| ||||||||| |||||||  ||||||||||||    
52350585 cttgaatagatgtgtgcttctacaattagttacctaggatacttga 52350540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 5884423 - 5884478
Alignment:
204 attataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg 259  Q
    |||||||||||||||||||  |||||||||||||||||||||||| |||| |||||    
5884423 attataatgcattcattgtacaacttgcatgaagtgaagtaaatgcagtgcttttg 5884478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 54945777 - 54945832
Alignment:
204 attataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg 259  Q
    |||||||||||||||||||  |||||||||||||||||||||||| |||| |||||    
54945777 attataatgcattcattgtacaacttgcatgaagtgaagtaaatgcagtgcttttg 54945832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 358 - 395
Target Start/End: Original strand, 10176713 - 10176750
Alignment:
358 aaagggggcattggtaaggtgacacataggaaaaatgt 395  Q
    ||||||||||||||||||||||||||||||||||||||    
10176713 aaagggggcattggtaaggtgacacataggaaaaatgt 10176750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 54945229 - 54945333
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||||| ||||  | || |||||||  |||||||||| | | |||||||| || | | ||||| ||||||||||| |||||||||| ||||    
54945229 atcatcaaaacatgactttgtctctctaatttcagaaagatcaagagcgttccattagagttttgagtagatatgtgcttctacgattagttaccgaggc 54945328  T
111 cttga 115  Q
     ||||    
54945329 attga 54945333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 161 - 393
Target Start/End: Original strand, 47233835 - 47234066
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
47233835 atgaataattttaaaatgtaaccccttaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatgaagtgtttttgc 47233934  T
261 aactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttagaaaa 360  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
47233935 aactgatggaaaatgaaagatagatagtaaggaatgactagtaaagaatcaagaacaaaagatagccacatgacataagtatgagagattagttag-aaa 47234033  T
361 gggggcattggtaaggtgacacataggaaaaat 393  Q
    |||||||||||||| ||||||||||||||||||    
47234034 gggggcattggtaaagtgacacataggaaaaat 47234066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 161 - 360
Target Start/End: Complemental strand, 44393797 - 44393597
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||| ||||||||| ||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||      
44393797 atgaataattttaaaatgaaacccctcactattaataaaatggattataatacattcattgtgtaacttccatgaagtgaagtaaatagagagtttttcc 44393698  T
261 aactgatgggaaatgaaaga-tagatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttagaaa 359  Q
    || ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| ||||||||| ||||||||| | | |||||||| |||    
44393697 aattgatgggaaatgaaagattagatagtaagaaatgactagtaaagaatcaagaacaaaagagagccacatgacataagtataaaaaattagttacaaa 44393598  T
360 a 360  Q
    |    
44393597 a 44393597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 25419588 - 25419717
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
25419588 atgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttgt 25419687  T
261 aactgatgggaaatgaaagatagatagtaa 290  Q
    ||||||||| ||||||||||||||||||||    
25419688 aactgatggaaaatgaaagatagatagtaa 25419717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 39066883 - 39067012
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
39066883 atgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttgt 39066982  T
261 aactgatgggaaatgaaagatagatagtaa 290  Q
    ||||||||| ||||||||||||||||||||    
39066983 aactgatggaaaatgaaagatagatagtaa 39067012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 5768077 - 5768206
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
5768077 atgaataattttaaaatgtaacccctcaatattaataaaattgattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttgt 5768176  T
261 aactgatgggaaatgaaagatagatagtaa 290  Q
    ||||||||| ||||||||||||||||||||    
5768177 aactgatggaaaatgaaagatagatagtaa 5768206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 25418758 - 25418903
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||| ||||||| | |||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||    
25418758 atcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggc 25418857  T
111 cttgaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    |||||||||||||| ||||||||| |||||||  ||||||||||||    
25418858 cttgaatagatgtgtgcttctacaattagttacctaggatacttga 25418903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 47233012 - 47233156
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||||||||||| | ||||||| ||||||| |||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||    
47233012 atcatcaaaacatgattttgactctccaatt-cacgaaggtcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggc 47233110  T
111 cttgaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    |||||||||||||| ||||| ||| |||||||  ||||||||||||    
47233111 cttgaatagatgtgtgcttccacaattagttacctaggatacttga 47233156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 47932975 - 47933030
Alignment:
204 attataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg 259  Q
    |||||||||||||||||||  |||||||||||||||||||||||| |||| |||||    
47932975 attataatgcattcattgtacaacttgcatgaagtgaagtaaatgcagtgcttttg 47933030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 115
Target Start/End: Original strand, 47932427 - 47932531
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||||| ||||  | || |||||||  |||||||||| | | |||||||| || | | ||||| ||||||||||| |||||||||| ||||    
47932427 atcatcaaaacatgactttgtctctctaatttcagaaagatcaagagcgttccattagagttttgagtagatatgtgcttctacgattagttaccgaggc 47932526  T
111 cttga 115  Q
     ||||    
47932527 attga 47932531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 44394515 - 44394471
Alignment:
112 ttgaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    |||||||||||||  |||||||| |||||||| ||||||||||||    
44394515 ttgaatagatgtgtacttctacaattagttatctaggatacttga 44394471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 161 - 395
Target Start/End: Original strand, 8150504 - 8150738
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||     
8150504 atgaataattttaaaatgtaacccctcaatattaataaaattgattataatgcattcattgtgtaactcgcataaagtgaagtaaatggagtgtttttgc 8150603  T
261 aactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttagaaaa 360  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||     
8150604 aactgatgggaaatgaaagatagatagtaagaaatggctagtaaagaatcaagaacaaaagtgagtcacatggcataagtatgagagattagttagaaag 8150703  T
361 gggggcattggtaaggtgacacataggaaaaatgt 395  Q
    ||||||||||||||||||||||||| | |||||||    
8150704 gggggcattggtaaggtgacacatatgcaaaatgt 8150738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 161 - 387
Target Start/End: Complemental strand, 10186483 - 10186257
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| | ||||||||     
10186483 atgaacaattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcaagaagtgaggtaaatgaaatgtttttgc 10186384  T
261 aactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttagaaaa 360  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||| ||||||||||| |||| ||||||||||||     
10186383 aactgataggaaatgaaagatagatagtaaggaatgactagtaaagaatcaagaacaaaagagagtcacttggcataagtaagagatattagttagaaag 10186284  T
361 gggggcattggtaaggtgacacatagg 387  Q
    |||||||||||||||||||||||||||    
10186283 gggggcattggtaaggtgacacatagg 10186257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 161 - 387
Target Start/End: Complemental strand, 4138453 - 4138220
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    ||||| |||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||     
4138453 atgaacaattttaaaacgtaacccctcaatattaataaaatagattataatgcattcattgtgtaacttgcaagaagtgaagtaaatgaaatgtttttgc 4138354  T
261 aactgatgggaaatgaaagat-------agatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagt 353  Q
    ||| ||| |||||||||||||       ||||||||  ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
4138353 aacggataggaaatgaaagatgaaagatagatagtagagaatggctagtaaagaatcaagaacaaaagagagccacttggcataagtatgagagattagt 4138254  T
354 tagaaaagggggcattggtaaggtgacacatagg 387  Q
    |||||| |||||||||||||||||||||||||||    
4138253 tagaaaggggggcattggtaaggtgacacatagg 4138220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 161 - 360
Target Start/End: Complemental strand, 20172087 - 20171887
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||| ||||||||| ||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| ||||||      
20172087 atgaataattttaaaatgaaacccctcactattaataaaatggattataatacattcattgtgtaacttccatgaagtgaagtaaatagagagtttttcc 20171988  T
261 aactgatgggaaatgaaaga-tagatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttagaaa 359  Q
    || ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| ||||||||| ||||||||| | | |||||||| |||    
20171987 aattgatgggaaatgaaagattagatagtaagaaatgactagtaaagaatcaagaacaaaagagagccacatgacataagtataaaaaattagttacaaa 20171888  T
360 a 360  Q
    |    
20171887 a 20171887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 28843874 - 28843729
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||| ||||||| | |||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||    
28843874 atcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggc 28843775  T
111 cttgaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    |||||||||||||| ||||||||| |||||||  ||||||||||||    
28843774 cttgaatagatgtgtgcttctacaattagttacctaggatacttga 28843729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 918180 - 918322
Alignment:
14 atcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggcctt 113  Q
    |||||||||||||||||| | |||||||| ||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||    
918180 atcaaaacatgattttgactctccaattttacgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggcctt 918279  T
114 gaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    ||||||||| |  |||||||| |||||||  ||||||||||||    
918280 gaatagatgcgtacttctacaattagttacctaggatacttga 918322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 215 - 363
Target Start/End: Original strand, 11428184 - 11428333
Alignment:
215 ttcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgtaactgatgggaaatgaaagat-agatagtaaggaatggctagtaaagaatcaag 313  Q
    ||||||||||||||| ||||||||||||||||||||  ||||||  || |||||| ||||||||||| ||||||||||||||||||||||||||||||||    
11428184 ttcattgtgtaacttccatgaagtgaagtaaatggatagtttttccaattgatggaaaatgaaagattagatagtaaggaatggctagtaaagaatcaag 11428283  T
314 aacaaaagatagccacatggcataagtatgagagattagttagaaaaggg 363  Q
    ||||||||| ||||||| ||||||||||||| | |||||||| |||||||    
11428284 aacaaaagagagccacaaggcataagtatgaaaaattagttacaaaaggg 11428333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 10187265 - 10187167
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctagg 109  Q
    ||||||||||||||||||||| | | |||||||||||||||  ||||||| ||||||||||| | || ||||||||||||||||||||| |||||||||    
10187265 atcatcaaaacatgattttgactcttcaatttcacgaagatttagaacattccattagaattttgaaaagatgtgtgcttctacaattatttacctagg 10187167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 4139195 - 4139097
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctagg 109  Q
    ||||||||||||||||||||| | | |||||||||||||||  ||||||| | ||||||||| | || ||||||||||||||||||||| |||||||||    
4139195 atcatcaaaacatgattttgactcttcaatttcacgaagatatagaacattcaattagaattttgaaaagatgtgtgcttctacaattatttacctagg 4139097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 211
Target Start/End: Original strand, 918968 - 919018
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataat 211  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
918968 atgaataattttaaaatgtaacccctcaatattaataaaatggattataat 919018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 11427459 - 11427492
Alignment:
76 aatagatgtgtgcttctacaattagttacctagg 109  Q
    ||||||||||| ||||||||||||||||||||||    
11427459 aatagatgtgtacttctacaattagttacctagg 11427492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 350 - 395
Target Start/End: Original strand, 14597489 - 14597534
Alignment:
350 tagttagaaaagggggcattggtaaggtgacacataggaaaaatgt 395  Q
    |||||||||| ||||| ||||||||||||||| ||||| |||||||    
14597489 tagttagaaaggggggaattggtaaggtgacatataggcaaaatgt 14597534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 20172804 - 20172760
Alignment:
112 ttgaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    |||||||||||||  |||||||| |||||||| ||||||||||||    
20172804 ttgaatagatgtgtacttctacaattagttatctaggatacttga 20172760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 161 - 395
Target Start/End: Original strand, 53830518 - 53830756
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     
53830518 atgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatagagtgtttttgc 53830617  T
261 aactgatgggaaatgaa----agatagatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttag 356  Q
    ||| ||||| |||||||    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
53830618 aaccgatggaaaatgaaagatagatagatagtaaggaacggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttaa 53830717  T
357 aaaagggggcattggtaaggtgacacataggaaaaatgt 395  Q
    ||| |||||||| ||||||||||||||||||||||||||    
53830718 aaaggggggcatcggtaaggtgacacataggaaaaatgt 53830756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 161 - 387
Target Start/End: Complemental strand, 21803025 - 21802799
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    ||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||     
21803025 atgaacaattttaaaacgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcaagaagtgaagtaaatgaaatgtttttgc 21802926  T
261 aactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttagaaaa 360  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||     
21802925 aactgataggaaatgaaagatagatagtaatgaatggctagtaaagaatcaagaacaaaagagagccacttggcataagtatgagagattagttagaaag 21802826  T
361 gggggcattggtaaggtgacacatagg 387  Q
    |||||||||||||||||||||||||||    
21802825 gggggcattggtaaggtgacacatagg 21802799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 161 - 395
Target Start/End: Original strand, 34737812 - 34738046
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||     
34737812 atgaataattttaaaatgtaacccctcattgttaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtagatggagtgtttttgc 34737911  T
261 aactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttagaaaa 360  Q
    ||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||     
34737912 aactgatggaaaatgaaagatagattgtacggaatggctagtaaagaatcaagaacaaaagagatccacatggcataagtatgagagattagttagaaag 34738011  T
361 gggggcattggtaaggtgacacataggaaaaatgt 395  Q
    || |||||||||||||||||||||| | |||||||    
34738012 ggaggcattggtaaggtgacacatatgcaaaatgt 34738046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 161 - 395
Target Start/End: Original strand, 21632782 - 21633017
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgttttt-g 259  Q
    ||||| ||||||||||  |||||||||||||||||| |||||||| ||||||||||||| |||||||||||| ||||||||||||||| | ||||||| |    
21632782 atgaacaattttaaaacataacccctcaatattaataaaatggatcataatgcattcatcgtgtaacttgcaagaagtgaagtaaatgaaatgttttttg 21632881  T
260 taactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttagaaa 359  Q
     ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||||    
21632882 caactgatagaaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagagcgccacttggcataagtatgagagattagttagaaa 21632981  T
360 agggggcattggtaaggtgacacataggaaaaatgt 395  Q
     ||||| ||||||||||||||||||||| |||||||    
21632982 ggggggtattggtaaggtgacacataggcaaaatgt 21633017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 161 - 360
Target Start/End: Complemental strand, 5430842 - 5430639
Alignment:
161 atgaataattttaaaatgtaacccctcaatatta---atgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttt 257  Q
    |||||||||||||||||||||||||||| |||||   || |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||    
5430842 atgaataattttaaaatgtaacccctcactattattaataaaatggattataatacattcattgtgtaacttccatgaagtgaagtaaatggagagtttt 5430743  T
258 tgtaactgatgggaaatgaaagat-agatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttag 356  Q
    |  || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||     
5430742 tccaattgatgggaaatgaaagattagatagtaaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataagtatgaaaaattagttac 5430643  T
357 aaaa 360  Q
    ||||    
5430642 aaaa 5430639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 164 - 342
Target Start/End: Original strand, 2500660 - 2500838
Alignment:
164 aataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgtaac 263  Q
    |||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| |||    
2500660 aataattttaaaatgtaaccgcacaatattaataaaatggattataatgcattcattgtgcaacttgcatgaagtgaagtaaatggtgtatttttgcaac 2500759  T
264 tgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtat 342  Q
     |||||||||||||||||| |||||||||||||  |||||  ||||||||||||||||| |||||||||||||||||||    
2500760 ggatgggaaatgaaagataaatagtaaggaatgattagtagggaatcaagaacaaaagagagccacatggcataagtat 2500838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 2505014 - 2505143
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
2505014 atgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttgt 2505113  T
261 aactgatgggaaatgaaagatagatagtaa 290  Q
    ||||||||| ||||||||||||||||||||    
2505114 aactgatggaaaatgaaagatagatagtaa 2505143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 25 - 156
Target Start/End: Original strand, 34737014 - 34737145
Alignment:
25 attttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtg 124  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
34737014 attttgaatctccaatttcacgaagatcaaaaacataccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtg 34737113  T
125 cgcttctacatttagttatataggatacttga 156  Q
     ||||||||| |||||||||||||||||||||    
34737114 tgcttctacaattagttatataggatacttga 34737145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 161 - 287
Target Start/End: Complemental strand, 46092432 - 46092306
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
46092432 atgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggcaagtttttgt 46092333  T
261 aactgatgggaaatgaaagatagatag 287  Q
    ||| ||||| |||||||||||||||||    
46092332 aaccgatggaaaatgaaagatagatag 46092306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 161 - 287
Target Start/End: Complemental strand, 46134957 - 46134831
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
46134957 atgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggcaagtttttgt 46134858  T
261 aactgatgggaaatgaaagatagatag 287  Q
    ||| ||||| |||||||||||||||||    
46134857 aaccgatggaaaatgaaagatagatag 46134831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 2504183 - 2504328
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||| ||||||| | |||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||    
2504183 atcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggc 2504282  T
111 cttgaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    |||||||||||||| ||||||||| |||||||  ||||||||||||    
2504283 cttgaatagatgtgtgcttctacaattagttacctaggatacttga 2504328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 161 - 322
Target Start/End: Complemental strand, 20036412 - 20036251
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtg-tttttg 259  Q
    |||| |||||||||||||||||  |||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||| || |||| |||||     
20036412 atgattaattttaaaatgtaactgctcaatattaataaaatgaattataatgcattcattatgcaacttgcatgaagtgaagtaactgaagtgtttttta 20036313  T
260 taactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaaga 322  Q
     | |||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||    
20036312 catctgatgggaaatgaaagatagatagtaatgaatgactagtaaagaat-aagaacaaaaga 20036251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 46093257 - 46093116
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||||||||||| | |||||||||| ||||||||||||||| |||||| |||| | |||||||| ||||||||||||||||||||||||||    
46093257 atcatcaaaacatgattttgactctccaatttcatgaagatcaagaacattccattaaaattttgaatagatgagtgcttctacaattagttacctaggc 46093158  T
111 cttgaatagatgtgcgcttctacatttagttatataggatac 152  Q
    |||||||||||||| | ||||||| |||||||  ||||||||    
46093157 cttgaatagatgtgtgtttctacaattagttacctaggatac 46093116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 2499943 - 2500045
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||||||||||  | |||||||||||||||||||||||||| ||||||||||| | ||||||||| |||||||||||||||||||||||||    
2499943 atcatcaaaacatgattttgtttctccaatttcacgaagatcaagaacattccattagaattttgaatagatgtctgcttctacaattagttacctaggc 2500042  T
111 ctt 113  Q
    |||    
2500043 ctt 2500045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 53829732 - 53829830
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctagg 109  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||||||||    
53829732 atcatcgaaacatgattttgaatctccaatttcacgaagatcaagaacattcctttagaattttgaatagatgtgtgcttctacaattagttacctagg 53829830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 20037200 - 20037079
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||||||||||  | |||||||||||||||||||||||  | ||||||||||| | |||||||||||||||||||||||||||||||||||    
20037200 atcatcaaaacatgattttg--tctccaatttcacgaagatcaagaaagttccattagaattttgaatagatgtgtgcttctacaattagttacctaggc 20037103  T
111 cttgaatagatgtgcgcttctaca 134  Q
     ||||||||  ||| |||||||||    
20037102 attgaataggcgtgtgcttctaca 20037079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 21803810 - 21803712
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctagg 109  Q
    ||||||||||||||||||||| | | |||||||||||||||| ||||||| ||||||||||| | || ||||||||||||||||||||| |||| ||||    
21803810 atcatcaaaacatgattttgactcttcaatttcacgaagatctagaacattccattagaattttgaaaagatgtgtgcttctacaattatttacgtagg 21803712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 109
Target Start/End: Original strand, 21631997 - 21632095
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctagg 109  Q
    ||||||||||||||||||||| | | ||||||||||||||||||| |||| ||||||||||| | || | | ||||||||||||||||| |||||||||    
21631997 atcatcaaaacatgattttgactcttcaatttcacgaagatcaagcacattccattagaattttgaaaaaaagtgtgcttctacaattatttacctagg 21632095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 350 - 395
Target Start/End: Complemental strand, 27256640 - 27256595
Alignment:
350 tagttagaaaagggggcattggtaaggtgacacataggaaaaatgt 395  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
27256640 tagttagaaaggggggcattggtaaggtgacacataggaaaaatgt 27256595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 43943520 - 43943465
Alignment:
204 attataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg 259  Q
    |||||||||||||||||||  |||||||||||||||||||||||| |||| |||||    
43943520 attataatgcattcattgtacaacttgcatgaagtgaagtaaatgcagtgcttttg 43943465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 395
Target Start/End: Complemental strand, 51868360 - 51868315
Alignment:
350 tagttagaaaagggggcattggtaaggtgacacataggaaaaatgt 395  Q
    |||||||||| ||||||||||||||||||||||||| | |||||||    
51868360 tagttagaaaggggggcattggtaaggtgacacataagcaaaatgt 51868315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 5431561 - 5431528
Alignment:
76 aatagatgtgtgcttctacaattagttacctagg 109  Q
    ||||||||||| ||||||||||||||||||||||    
5431561 aatagatgtgtacttctacaattagttacctagg 5431528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 53829794 - 53829838
Alignment:
112 ttgaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    ||||||||||||| ||||||||| |||||||  ||||||||||||    
53829794 ttgaatagatgtgtgcttctacaattagttacctaggatacttga 53829838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 161 - 395
Target Start/End: Original strand, 21605080 - 21605313
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
21605080 atgaataattttaaaatttaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatgaagtgtttttgc 21605179  T
261 aactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttagaaaa 360  Q
    | |  |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
21605180 agccaatggaaaatgaaagatagatagtaaggaatgactaataaagaatcaagaacaaaagatagccacatgacataagtatgagagattagttag-aaa 21605278  T
361 gggggcattggtaaggtgacacataggaaaaatgt 395  Q
    ||||| |||||||||||||||||||||||||||||    
21605279 gggggtattggtaaggtgacacataggaaaaatgt 21605313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 161 - 395
Target Start/End: Original strand, 37302001 - 37302235
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    ||||||||||||||||||||||||  || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
37302001 atgaataattttaaaatgtaaccctccattattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgc 37302100  T
261 aactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttagaaaa 360  Q
    || |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||     
37302101 aaatgatgggaaatgaaagatagattgtacggaatggctagtaaagaatcaagaacaaaagagatccacatggcataagtataagagattagttagaaag 37302200  T
361 gggggcattggtaaggtgacacataggaaaaatgt 395  Q
    |  | |||||||||||||||||||| | |||||||    
37302201 gaagtcattggtaaggtgacacatatgcaaaatgt 37302235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 9 - 156
Target Start/End: Original strand, 37301100 - 37301247
Alignment:
9 acatcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctag 108  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
37301100 acatcatcaaaacatgattttgaatctccaatttcacgaagatcaagaacataccattagaattttgaatagatgtgtgcttctacaattagttacctag 37301199  T
109 gccttgaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    |||||||||||||||| ||||||||| ||||||||||| |||||||||    
37301200 gccttgaatagatgtgtgcttctacaattagttatataagatacttga 37301247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 161 - 290
Target Start/End: Complemental strand, 36991172 - 36991043
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
36991172 atgaataattttaaaatgtaacccctcaatattaataaaatagattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttgt 36991073  T
261 aactgatgggaaatgaaagatagatagtaa 290  Q
    ||||||||| ||||||||||||||||||||    
36991072 aactgatggaaaatgaaagatagatagtaa 36991043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 21604317 - 21604464
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatca--agaacataccattagaattctaaatagatgtgtgcttctacaattagttacctag 108  Q
    ||||||||||||||||||||| | || ||||||||||||||||  |||||||  |||||||||| | |||||||||||||||||||||||||||||||||    
21604317 atcatcaaaacatgattttgactctctaatttcacgaagatcataagaacatttcattagaattttgaatagatgtgtgcttctacaattagttacctag 21604416  T
109 gccttgaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
     ||||||||||||||| ||||||||| |||||||  ||||||||||||    
21604417 accttgaatagatgtgtgcttctacaattagttacctaggatacttga 21604464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 152
Target Start/End: Complemental strand, 36992000 - 36991859
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||||||||||| | |||||||||| ||||||||||||||| |||||| |||| | |||||||| ||||||||||||||| |||||||| |    
36992000 atcatcaaaacatgattttgactctccaatttcatgaagatcaagaacattccattaaaattttgaatagatgagtgcttctacaattatttacctagac 36991901  T
111 cttgaatagatgtgcgcttctacatttagttatataggatac 152  Q
    |||||||||||||| | ||||||| |||||||  ||||||||    
36991900 cttgaatagatgtgtgtttctacaattagttacctaggatac 36991859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 178; Significance: 7e-96; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 161 - 395
Target Start/End: Original strand, 41646721 - 41646953
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||     
41646721 atgaataattttaaaatgtaacccctcaatattaataaaatggattaaaatacattcattgtgtaacttgcatgaaatgaagtaaatggagtgtttttgc 41646820  T
261 aactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttagaaaa 360  Q
    ||| ||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
41646821 aaccgatggaaaatgaaagata---agtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttaaaaag 41646917  T
361 ggggg-cattggtaaggtgacacataggaaaaatgt 395  Q
    ||||| ||||||||||||||||||||||||||||||    
41646918 gggggacattggtaaggtgacacataggaaaaatgt 41646953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 7574104 - 7574233
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
7574104 atgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttgt 7574203  T
261 aactgatgggaaatgaaagatagatagtaa 290  Q
    ||||||||| ||||||||||||||||||||    
7574204 aactgatggaaaatgaaagatagatagtaa 7574233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 16668699 - 16668828
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
16668699 atgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattatgtaacttgcatgaagtgaagtaaatggagagtttttgt 16668798  T
261 aactgatgggaaatgaaagatagatagtaa 290  Q
    ||||||||| ||||||||||||||||||||    
16668799 aactgatggaaaatgaaagatagatagtaa 16668828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 7573274 - 7573419
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||| ||||||| | |||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||    
7573274 atcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggc 7573373  T
111 cttgaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    |||||||||||||| ||||||||| |||||||  ||||||||||||    
7573374 cttgaatagatgtgtgcttctacaattagttacctaggatacttga 7573419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 16667869 - 16668014
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||| ||||||| | |||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||    
16667869 atcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggc 16667968  T
111 cttgaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    |||||||||||||| ||||||||| |||||||  ||||||||||||    
16667969 cttgaatagatgtgtgcttctacaattagttacctaggatacttga 16668014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 41645890 - 41646035
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||||||||||| | ||||||||||  |||||||||||||| ||||||||||| | ||||||||  |||||||||||||||||||||||||    
41645890 atcatcaaaacatgattttgactctccaatttcagaaagatcaagaacattccattagaattttgaatagatggatgcttctacaattagttacctaggc 41645989  T
111 cttgaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    |||||||||||| | ||||||||| |||||||  || |||||||||    
41645990 cttgaatagatgcgtgcttctacaattagttacctatgatacttga 41646035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 43565067 - 43564925
Alignment:
14 atcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggcctt 113  Q
    |||||||||||||||||| | |||||||| | |||||| |||||||| ||||||||||| | ||||||| |||||||||||||||||||||||||| |||    
43565067 atcaaaacatgattttgactgtccaattttatgaagatgaagaacattccattagaattttgaatagatatgtgcttctacaattagttacctaggactt 43564968  T
114 gaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    ||||||||||| ||||||||| |||||||  || |||||||||    
43564967 gaatagatgtgtgcttctacaattagttacctatgatacttga 43564925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 14 - 156
Target Start/End: Complemental strand, 29456275 - 29456134
Alignment:
14 atcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggcctt 113  Q
    |||||||||||||||||| | |||| ||| |||||||| |||||||| ||||||||||| | ||||||| |||||||||||||||||||||||||| |||    
29456275 atcaaaacatgattttgactctccatttt-acgaagatgaagaacattccattagaattttgaatagatatgtgcttctacaattagttacctaggactt 29456177  T
114 gaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    ||||||||||| ||||||||| |||||||  || |||||||||    
29456176 gaatagatgtgtgcttctacaattagttacctaagatacttga 29456134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 43564288 - 43564238
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataat 211  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
43564288 atgaataattttaaaatgtaacccctcaatattaataaaatggattataat 43564238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 29455498 - 29455448
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataat 211  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||    
29455498 atgaataattttaaaatgtaacccctcgatattaataaaatggattataat 29455448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 395
Target Start/End: Original strand, 37904075 - 37904122
Alignment:
348 attagttagaaaagggggcattggtaaggtgacacataggaaaaatgt 395  Q
    |||||||||| | |||||||||||| ||||||||||||||||||||||    
37904075 attagttagagaggggggcattggtgaggtgacacataggaaaaatgt 37904122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 5968165 - 5968209
Alignment:
112 ttgaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||||    
5968165 ttgaatagatgtgtgcttctacaattagttatctaggatacttga 5968209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 5968168 - 5968201
Alignment:
76 aatagatgtgtgcttctacaattagttacctagg 109  Q
    |||||||||||||||||||||||||||| |||||    
5968168 aatagatgtgtgcttctacaattagttatctagg 5968201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 161 - 395
Target Start/End: Complemental strand, 3376 - 3141
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    ||||||||||||||||||||||| || ||||||||| |||||||||||||| || |||||||| |||||||||||||||||||||||| ||||||||||     
3376 atgaataattttaaaatgtaaccgcttaatattaataaaatggattataattcaatcattgtgcaacttgcatgaagtgaagtaaatgaagtgtttttgc 3277  T
261 aactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttagaaaa 360  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||    
3276 aactgatgggaaatgaaagataaatagtaaagaatggctagtaaagaatcaagaacaaaagagagccacatgacataagtatgagagattagttacaaaa 3177  T
361 ggg-ggcattggtaaggtgacacataggaaaaatgt 395  Q
    ||| | | ||||| | |||||||||| | |||||||    
3176 gggagacgttggtgaagtgacacataagtaaaatgt 3141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 161 - 359
Target Start/End: Original strand, 22912541 - 22912739
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||||||| ||||| ||||||| |||||| |||||||||||||||| |||||| |||| ||||||||||||||||||||||| ||     
22912541 atgaataattttaaaatgtaactcctca-tattaataaaatggtttataatgcattcattttgtaacatgcaagaagtgaagtaaatggagtgtttctgc 22912639  T
261 aac-tgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttagaaa 359  Q
    ||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
22912640 aacctgatgggaaatgaaagataaataataaggaatggctagtaaagaatcaagaacaaaagagagccacatggcataagtatgagagattagttagaaa 22912739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 161 - 290
Target Start/End: Complemental strand, 13786358 - 13786229
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
13786358 atgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttgt 13786259  T
261 aactgatgggaaatgaaagatagatagtaa 290  Q
    ||||||||| ||||||||||||||||||||    
13786258 aactgatggaaaatgaaagatagatagtaa 13786229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 161 - 363
Target Start/End: Original strand, 23726038 - 23726239
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    ||||||||||| |||||||||||  | ||||||||| |||||||||||||| ||||||||||| |||||||||||| ||||||||||| ||||||||||     
23726038 atgaataattt-aaaatgtaaccgtttaatattaataaaatggattataattcattcattgtgcaacttgcatgaaatgaagtaaatgaagtgtttttgc 23726136  T
261 aactgatgggaaatgaaagatagatagtaaggaatggctagtaaagaatcaagaacaaaagatagccacatggcataagtatgagagattagttagaaaa 360  Q
    ||| ||||  |||||||||||||||||||| ||||| | ||||||||||||||||||||||| ||||| ||  |||||||||||||||||||||| ||||    
23726137 aacagatgaaaaatgaaagatagatagtaaagaatgaccagtaaagaatcaagaacaaaagagagccatataacataagtatgagagattagttacaaaa 23726236  T
361 ggg 363  Q
    |||    
23726237 ggg 23726239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 25807785 - 25807914
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
25807785 atgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggaaagtttttgt 25807884  T
261 aactgatgggaaatgaaagatagatagtaa 290  Q
    || |||||| ||||||||||||||||||||    
25807885 aattgatggaaaatgaaagatagatagtaa 25807914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 13787188 - 13787043
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||| ||||||| | |||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||    
13787188 atcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggc 13787089  T
111 cttgaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    |||||||||||||| ||||||||| |||||||  ||||||||||||    
13787088 cttgaatagatgtgtgcttctacaattagttacctaggatacttga 13787043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 25806954 - 25807099
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||| ||||||| | |||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||    
25806954 atcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggc 25807053  T
111 cttgaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    |||||||||||||| ||||||||| |||||||  ||||||||||||    
25807054 cttgaatagatgtgtgcttctacaattagttacctaggatacttga 25807099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 22911841 - 22911983
Alignment:
14 atcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggcctt 113  Q
    |||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||| | ||||||||  ||||||||||||| ||||||||||||||    
22911841 atcaaaacatgattttgactctccaatttcacgaagatcaagaacattccattagaattttgaatagatgcatgcttctacaatttgttacctaggcctt 22911940  T
114 gaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    ||||| ||||| ||||||||| |||||||  ||||||||||||    
22911941 gaataaatgtgtgcttctacaattagttacctaggatacttga 22911983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 39624392 - 39624248
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||||||||||  | |||||||| ||||||||||||||||| |||||| |||| | ||||||||||||||||||||||||||||  |||||    
39624392 atcatcaaaacatgattttgtctctccaattttacgaagatcaagaacatgccattaaaattttgaatagatgtgtgcttctacaattagttatgtaggc 39624293  T
111 cttgaatagatgtgcgcttctacatttagttatataggatacttg 155  Q
    |||||||| ||||| ||||||||| |||||||  |||||||||||    
39624292 cttgaatatatgtgtgcttctacaattagttacctaggatacttg 39624248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 13433466 - 13433595
Alignment:
161 atgaataattttaaaatgtaacccctcaatattaatgaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttgt 260  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
13433466 atgaataattttaaaatgtaacccctcaatattaataaaatggattataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagagtttttgt 13433565  T
261 aactgatgggaaatgaaagatagatagtaa 290  Q
    ||||||||| ||||||||||||||||||||    
13433566 aactgatggaaaatgaaagatagatagtaa 13433595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 13432636 - 13432781
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||| ||||||| | |||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||    
13432636 atcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggc 13432735  T
111 cttgaatagatgtgcgcttctacatttagttatataggatacttga 156  Q
    |||||||||||||| ||||||||| |||||||  ||||||||||||    
13432736 cttgaatagatgtgtgcttctacaattagttacctaggatacttga 13432781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 18883503 - 18883359
Alignment:
11 atcatcaaaacatgattttgaatatccaatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctaggc 110  Q
    ||||||||||||||||||||  | |||||||||||||||||||||||||| |||||| |||| | ||||||||||||||||||||||||||||  |||||    
18883503 atcatcaaaacatgattttgtctctccaatttcacgaagatcaagaacatgccattaaaattttgaatagatgtgtgcttctacaattagttatgtaggc 18883404  T
111 cttgaatagatgtgcgcttctacatttagttatataggatacttg 155  Q
    |||||||||||||| ||||||||| |||||||  |||||||||||    
18883403 cttgaatagatgtgtgcttctacaattagttacctaggatacttg 18883359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 204 - 259
Target Start/End: Complemental strand, 16857290 - 16857235
Alignment:
204 attataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg 259  Q
    |||||||||||||||||||  |||||||||||||||||||||||| |||| |||||    
16857290 attataatgcattcattgtacaacttgcatgaagtgaagtaaatgcagtgcttttg 16857235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 109
Target Start/End: Original strand, 16711405 - 16711440
Alignment:
74 taaatagatgtgtgcttctacaattagttacctagg 109  Q
    ||||||||||||||||||||||||||||||||||||    
16711405 taaatagatgtgtgcttctacaattagttacctagg 16711440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 26615320 - 26615377
Alignment:
204 attataatgcattcattgtgtaac--ttgcatgaagtgaagtaaatggagtgtttttg 259  Q
    |||||||||||||||||||  |||  ||||||||||||||||||||| ||||||||||    
26615320 attataatgcattcattgtacaacaattgcatgaagtgaagtaaatgaagtgtttttg 26615377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 26720593 - 26720663
Alignment:
38 aatttcacgaagatcaagaacataccattagaattctaaatagatgtgtgcttctacaattagttacctag 108  Q
    |||||||  |||||||||| ||| |||||||| || |   |||||||||||||||||||||||||||||||    
26720593 aatttcagaaagatcaagagcattccattagagttttgtgtagatgtgtgcttctacaattagttacctag 26720663  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 26721248 - 26721305
Alignment:
204 attataatgcattcattgtgtaac--ttgcatgaagtgaagtaaatggagtgtttttg 259  Q
    |||||||||||||||||||  |||  ||||||||||||||||||||| ||||||||||    
26721248 attataatgcattcattgtacaacaattgcatgaagtgaagtaaatgaagtgtttttg 26721305  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 16712122 - 16712155
Alignment:
161 atgaataattttaaaatgtaacccctcaatatta 194  Q
    |||||||||||||||||||||||||||| |||||    
16712122 atgaataattttaaaatgtaacccctcactatta 16712155  T

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Target: scaffold0182 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 259
Target Start/End: Original strand, 10171 - 10226
Alignment:
204 attataatgcattcattgtgtaacttgcatgaagtgaagtaaatggagtgtttttg 259  Q
    ||||||||||||||||||   |||||||||||||||||||||||| |||| |||||    
10171 attataatgcattcattgcacaacttgcatgaagtgaagtaaatgcagtgcttttg 10226  T

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Target: scaffold0316 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 395
Target Start/End: Original strand, 5480 - 5522
Alignment:
353 ttagaaaagggggcattggtaaggtgacacataggaaaaatgt 395  Q
    ||||||| |||  ||||||||||||||||||||||||||||||    
5480 ttagaaaggggaacattggtaaggtgacacataggaaaaatgt 5522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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