View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15426_low_19 (Length: 408)
Name: NF15426_low_19
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 151; Significance: 9e-80; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 153 - 396
Target Start/End: Complemental strand, 39836392 - 39836162
Alignment:
| Q |
153 |
gaattgaaattttgatgatcacaaacaaagcta-tgatatattacatacattatgaaatggtttgatgaagaaaatatgtgttggcagcggtgatgactg |
251 |
Q |
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| T |
39836392 |
gaattgaaatttagatgatcatgaacaaagctaatgatatattacatacattatgaaatggtttgatgaagaaaatatgtg------------atgactg |
39836305 |
T |
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| Q |
252 |
agctaaaaattgaaatttagacgatctagaacaaaacattatgaagtaatgacttgaaatatcagtttattgattannnnnnngttgcaaaaagatgtaa |
351 |
Q |
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| T |
39836304 |
agctaaaaattgaaatttagacgatctagaacaaaacattatgaagtaatgacttgaaatatcagtttattgatt--tttttttttgcaaaaagatgtaa |
39836207 |
T |
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| Q |
352 |
aatattattagttctatatacaccattcttcttcccatatttcat |
396 |
Q |
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| T |
39836206 |
aatattattagttctatatacaccattcttcttcccatatttcat |
39836162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 39836613 - 39836433
Alignment:
| Q |
17 |
aaaatatacatgtgttggcataagtgatggagcaatgaattgaaattgtgatgatcatgaacaaagttaattatgatatact----tactatatacatat |
112 |
Q |
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| T |
39836613 |
aaaatatatatgtgttggcataagtgatggagcaatgaattgaaattgtgatgatcatgaacaaagtta----tgatatactaacttactatatacat-- |
39836520 |
T |
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| Q |
113 |
catgaaatggtttgatgacgaaaatatgtgttagaggtacgaattgaaattttgatgatcacaaacaaagctatgatatattacata |
199 |
Q |
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| T |
39836519 |
catgaaatggtttgatgacgaaaatatgtgttagaggtacgaattgaaattttgatgatcacaaacaaagtaatgatgtactacata |
39836433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 153 - 234
Target Start/End: Complemental strand, 39836577 - 39836488
Alignment:
| Q |
153 |
gaattgaaattttgatgatcacaaacaaagctatgatata-----ttac---atacattatgaaatggtttgatgaagaaaatatgtgtt |
234 |
Q |
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| T |
39836577 |
gaattgaaattgtgatgatcatgaacaaagttatgatatactaacttactatatacatcatgaaatggtttgatgacgaaaatatgtgtt |
39836488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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