View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15426_low_22 (Length: 376)
Name: NF15426_low_22
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 30 - 358
Target Start/End: Complemental strand, 5390102 - 5389774
Alignment:
| Q |
30 |
gttgaatacacaatttttcaatggttgaatatacaatatttcaacactttccaatacaagggcaaaggagattaccgctctattgtcagtggccactcca |
129 |
Q |
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| T |
5390102 |
gttgaatacacaatttttcaatggttgaatatacaatattttaacagttttcaatacaagggcaaaggagattaccgctctattgtcagtggccactcca |
5390003 |
T |
|
| Q |
130 |
gaaatgacgaacataagataaaaagtgattatgaattcgaccacaaatgcctggagatcagaaccagctggaagtgttcctgaaaaatggttttctttgc |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5390002 |
gaaatgacgaacataagataaaaagtgattatgaattcgaccacaaatgcctggagatcagaaccagttggaagtgttcctgaaaaatggttttctttgc |
5389903 |
T |
|
| Q |
230 |
cattgaatataagcctaagtgttccacttgcaagggttgatccaagaacttgagatattatataagccggtacctgcaagatagtagattgaagaaaaac |
329 |
Q |
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| T |
5389902 |
cattgaatataagcctaagagttccacttgcaagggttgatccaagaacttgagatagtatataagccggtacctgcaagattatagattgaagaaaaac |
5389803 |
T |
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| Q |
330 |
tcaacaannnnnnnagacaaactagtaca |
358 |
Q |
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||||||| ||||||||||||||| |
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| T |
5389802 |
tcaacaatttttttagacaaactagtaca |
5389774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 83 - 336
Target Start/End: Complemental strand, 5403395 - 5403142
Alignment:
| Q |
83 |
atacaagggcaaaggagattaccgctctattgtcagtggccactccagaaatgacgaacataagataaaaagtgattatgaattcgaccacaaatgcctg |
182 |
Q |
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| T |
5403395 |
atacaagggcaaaggagattaccgctctatcatcggtggccactccagatatgacgaacataagataaaaagtgattatgaattcgaccacaaatgcctg |
5403296 |
T |
|
| Q |
183 |
gagatcagaaccagctggaagtgttcctgaaaaatggttttctttgccattgaatataagcctaagtgttccacttgcaagggttgatccaagaacttga |
282 |
Q |
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| T |
5403295 |
gagatcagaaccagttggaagtgttcctgaaaaatggttttctttgccattgaatataagcctaagtgttccacttgcaagggttgatccaagaacttga |
5403196 |
T |
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| Q |
283 |
gatattatataagccggtacctgcaagatagtagattgaagaaaaactcaacaa |
336 |
Q |
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||||||||||||||||||||||||||||| || ||||||||||||| |||||| |
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| T |
5403195 |
gatattatataagccggtacctgcaagattatatattgaagaaaaacacaacaa |
5403142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 99 - 310
Target Start/End: Complemental strand, 5397760 - 5397549
Alignment:
| Q |
99 |
gattaccgctctattgtcagtggccactccagaaatgacgaacataagataaaaagtgattatgaattcgaccacaaatgcctggagatcagaaccagct |
198 |
Q |
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||||||||||||||| |||||||| ||||||||||||| ||||||||| | |||||||| || |||||||||||||| || || ||||||||||||||| |
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| T |
5397760 |
gattaccgctctattatcagtggcaactccagaaatgatgaacataaggaagaaagtgataataaattcgaccacaaaagcttgaagatcagaaccagct |
5397661 |
T |
|
| Q |
199 |
ggaagtgttcctgaaaaatggttttctttgccattgaatataagcctaagtgttccacttgcaagggttgatccaagaacttgagatattatataagccg |
298 |
Q |
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||||||||||||| ||| || ||||| |||||| |||||||||| | || |||||||||||| ||||| |||| || |||| ||||||||||| | |
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| T |
5397660 |
ggaagtgttcctgcaaattgattttccttgccactgaatataagtttgagaactccacttgcaagtgttgagccaacgacctgagcaattatataagctg |
5397561 |
T |
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| Q |
299 |
gtacctgcaaga |
310 |
Q |
| |
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| | |||||||| |
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| T |
5397560 |
gcaactgcaaga |
5397549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 100 - 304
Target Start/End: Original strand, 5407130 - 5407334
Alignment:
| Q |
100 |
attaccgctctattgtcagtggccactccagaaatgacgaacataagataaaaagtgattatgaattcgaccacaaatgcctggagatcagaaccagctg |
199 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||||||||||||||||| || |||||||| || |||||||||||||| || || | || ||||||| | |
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| T |
5407130 |
attaccgctctattatcggtggcaactccagaaatgacgaacataaggtagaaagtgataataaattcgaccacaaaagcttgatggtccaaaccagccg |
5407229 |
T |
|
| Q |
200 |
gaagtgttcctgaaaaatggttttctttgccattgaatataagcctaagtgttccacttgcaagggttgatccaagaacttgagatattatataagccgg |
299 |
Q |
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|||||||||||| ||| || ||||| |||||| ||||||| || | || | | |||||||||| ||||| ||| || |||| ||||||||||| || |
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| T |
5407230 |
gaagtgttcctgcaaattgattttccttgccactgaatatgagtttgagagcttcacttgcaagtgttgagccagcgacctgagcaattatataagctgg |
5407329 |
T |
|
| Q |
300 |
tacct |
304 |
Q |
| |
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||||| |
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| T |
5407330 |
tacct |
5407334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 304
Target Start/End: Complemental strand, 36268448 - 36268245
Alignment:
| Q |
101 |
ttaccgctctattgtcagtggccactccagaaatgacgaacataagataaaaagtgattatgaattcgaccacaaatgcctggagatcagaaccagctgg |
200 |
Q |
| |
|
||||||||||||| |||||||| |||||||| |||| |||||||| ||||||||||| |||||||| | |||||| || || || ||||| |||||||| |
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| T |
36268448 |
ttaccgctctattatcagtggcaactccagatatgataaacataaggtaaaaagtgatgatgaattcaatcacaaaagcttgaaggtcagacccagctgg |
36268349 |
T |
|
| Q |
201 |
aagtgttcctgaaaaatggttttctttgccattgaatataagcctaagtgttccacttgcaagggttgatccaagaacttgagatattatataagccggt |
300 |
Q |
| |
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||||||||| ||| || || | |||||| | ||||| || ||||| |||||||||||||| || ||||||| ||||||| | || |||||| ||| |
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| T |
36268348 |
aagtgttccaacaaattgattatgtttgccggtaaatattagtctaagagttccacttgcaagtgtggatccaaagacttgagctgctacataagctggt |
36268249 |
T |
|
| Q |
301 |
acct |
304 |
Q |
| |
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|||| |
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|
| T |
36268248 |
acct |
36268245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 36263410 - 36263291
Alignment:
| Q |
101 |
ttaccgctctattgtcagtggccactccagaaatgacgaacataagataaaaagtgattatgaattcgaccacaaatgcctggagatcagaaccagctgg |
200 |
Q |
| |
|
||||||||||| | || ||||| |||||||||||| |||||||| ||||| ||| |||||||||| | ||||| || || || | ||| |||| || |
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| T |
36263410 |
ttaccgctctagtatcggtggcaactccagaaatggtaaacataaggtaaaatgtggttatgaattcaagaacaaaagcttgaaggttagacccagaagg |
36263311 |
T |
|
| Q |
201 |
aagtgttcctgaaaaatggt |
220 |
Q |
| |
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||||||||||||||| |||| |
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| T |
36263310 |
aagtgttcctgaaaagtggt |
36263291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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