View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15426_low_23 (Length: 374)

Name: NF15426_low_23
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15426_low_23
NF15426_low_23
[»] chr8 (5 HSPs)
chr8 (14-183)||(27815507-27815676)
chr8 (17-177)||(27817193-27817351)
chr8 (240-357)||(27815733-27815850)
chr8 (14-84)||(23126717-23126788)
chr8 (20-86)||(29634501-29634567)
[»] chr6 (3 HSPs)
chr6 (14-86)||(8909913-8909985)
chr6 (14-84)||(18691938-18692009)
chr6 (14-53)||(18700624-18700663)
[»] chr5 (4 HSPs)
chr5 (20-83)||(40882067-40882130)
chr5 (14-84)||(40802385-40802456)
chr5 (14-86)||(32722057-32722127)
chr5 (107-139)||(38630925-38630957)
[»] chr3 (1 HSPs)
chr3 (19-86)||(6079831-6079898)
[»] chr7 (1 HSPs)
chr7 (20-53)||(6768511-6768544)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 14 - 183
Target Start/End: Original strand, 27815507 - 27815676
Alignment:
Q  14 tactgaaaagtaacattttcttttttaacctatcacttttgtctatttacatgtgtttgcgcagtagaaaaagagaacggtatatataaagtcaagataa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  27815507 tactgaaaagtaacattttcttttttaacctatcacttttgtctatttacatgtgtttgtgcagtagaaaaagaggacggtatatataaagtcaagataa 27815606  T
Q  114 ttatatatcttatcttcaagcaaatatgagaaaaaagtagaaaatattaagtggtttgacaattggcaac 183  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||    
T  27815607 ttatatatcttatcttcaagcaaatatcagaaaaatgtagaaaatattaagtggtttgacacttggcaac 27815676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 27817193 - 27817351
Alignment:
Q  17 tgaaaagtaacattttcttttttaacctatcacttttgtctatttacatgtgtttgcgcagtagaaaaagagaacggtatatataaagtcaagataatta 116  Q
    |||||||||| |||||  ||||||||||| ||||||||| |||||||||||||||||| ||||||||||| | ||  ||||| |||||| ||||||||||    
T  27817193 tgaaaagtaatatttt--tttttaacctaacacttttgtttatttacatgtgtttgcgtagtagaaaaagcggacaatatatttaaagttaagataatta 27817290  T
Q  117 tatatcttatcttcaagcaaatatgagaaaaaagtagaaaatattaagtggtttgacaatt 177  Q
    |||||||||||||||| |||||| |||| ||||||||||||||||||| ||| ||||||||    
T  27817291 tatatcttatcttcaaacaaataggagagaaaagtagaaaatattaagcggtatgacaatt 27817351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 240 - 357
Target Start/End: Original strand, 27815733 - 27815850
Alignment:
Q  240 ggtcataatatacccatttcaatttaaaaaggaatggttcctttttnnnnnnntaattttaacacatgataaaaagtaacctactacctcgaacatcacc 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||    
T  27815733 ggtcataatatacccatttcaatttaaaaaggaatggttccttttaaaaaaaataattttaacacatgataaaaagtaacctactacctcgaacatcacc 27815832  T
Q  340 agtaaaaaatcatacata 357  Q
     |||||||||||||||||    
T  27815833 ggtaaaaaatcatacata 27815850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 23126717 - 23126788
Alignment:
Q  14 tactgaaaagtaacattttcttttttaacctatcactttt-gtctatttacatgtgtttgcgcagtagaaaa 84  Q
    |||| |||||||||||||||||||| ||||||||||||||  | ||  ||||||| ||||||||||||||||    
T  23126717 tactcaaaagtaacattttctttttcaacctatcacttttaatttagatacatgtatttgcgcagtagaaaa 23126788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 29634501 - 29634567
Alignment:
Q  20 aaagtaacattttcttttttaacctatcacttttgtctatttacatgtgtttgcgcagtagaaaaag 86  Q
    ||||||| ||||||||||  |||||||||||||||| ||   |  ||||||||||||||||||||||    
T  29634501 aaagtaaaattttcttttacaacctatcacttttgtatagaaatgtgtgtttgcgcagtagaaaaag 29634567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 8909913 - 8909985
Alignment:
Q  14 tactgaaaagtaacattttcttttttaacctatcacttttgtctatttacatgtgtttgcgcagtagaaaaag 86  Q
    |||| ||||||||||||||||||||||||||||||||||| | ||  || ||| |||||||||||||||||||    
T  8909913 tactcaaaagtaacattttcttttttaacctatcacttttatttagatatatgcgtttgcgcagtagaaaaag 8909985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 18692009 - 18691938
Alignment:
Q  14 tactgaaaagtaacattttcttttttaacctatcactttt-gtctatttacatgtgtttgcgcagtagaaaa 84  Q
    |||| |||||||||||||||||||| ||||||||||||||  | ||  ||||||||||||||||||||||||    
T  18692009 tactcaaaagtaacattttctttttcaacctatcacttttaatttagatacatgtgtttgcgcagtagaaaa 18691938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 53
Target Start/End: Complemental strand, 18700663 - 18700624
Alignment:
Q  14 tactgaaaagtaacattttcttttttaacctatcactttt 53  Q
    |||| |||||||||||||||||||| ||||||||||||||    
T  18700663 tactcaaaagtaacattttctttttcaacctatcactttt 18700624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 40882130 - 40882067
Alignment:
Q  20 aaagtaacattttcttttttaacctatcacttttgtctatttacatgtgtttgcgcagtagaaa 83  Q
    |||||||||||||||||||||||||||||||||| | ||  || ||| ||||||||||||||||    
T  40882130 aaagtaacattttcttttttaacctatcacttttatttagatatatgcgtttgcgcagtagaaa 40882067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 40802385 - 40802456
Alignment:
Q  14 tactgaaaagtaacattttcttttttaacctatcactttt-gtctatttacatgtgtttgcgcagtagaaaa 84  Q
    |||| |||||||||||||||||||| ||||||||||||||  | ||  || |||||||||||||||||||||    
T  40802385 tactcaaaagtaacattttctttttcaacctatcacttttaatttagatatatgtgtttgcgcagtagaaaa 40802456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 32722127 - 32722057
Alignment:
Q  14 tactgaaaagtaacattttcttttttaacctatcacttttgtctatttacatgtgtttgcgcagtagaaaaag 86  Q
    |||| |||||||||||||| |||||  |||||||| |||||| ||  ||  ||||||||||||||||||||||    
T  32722127 tactcaaaagtaacattttatttttctacctatcatttttgtttaaata--tgtgtttgcgcagtagaaaaag 32722057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 139
Target Start/End: Complemental strand, 38630957 - 38630925
Alignment:
Q  107 aagataattatatatcttatcttcaagcaaata 139  Q
    ||||||||| |||||||||||||||||||||||    
T  38630957 aagataattgtatatcttatcttcaagcaaata 38630925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 6079831 - 6079898
Alignment:
Q  19 aaaagtaacattttcttttttaacctatcacttttgtctatttacatgtgtttgcgcagtagaaaaag 86  Q
    ||||||| ||||||||||| |||||||||| |||||| ||  || ||| ||| |||||||||||||||    
T  6079831 aaaagtagcattttcttttctaacctatcatttttgtgtagatatatgcgttagcgcagtagaaaaag 6079898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 6768544 - 6768511
Alignment:
Q  20 aaagtaacattttcttttttaacctatcactttt 53  Q
    ||||||||||||||||||| ||||||||||||||    
T  6768544 aaagtaacattttctttttgaacctatcactttt 6768511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University