View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15426_low_28 (Length: 315)
Name: NF15426_low_28
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_low_28 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 649522 - 649821
Alignment:
| Q |
16 |
cacatggaaggtattcatgtttccttatcaatgcaattgctattgnnnnnnnctttaggtcttattttaatattctcaactagcagtatcatgttactta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
649522 |
cacatggaaggtattcatgtttccttatcaatgcaatggctattgtttttttctttaggtcttattttaatattctcaactagcagtatcatgttactta |
649621 |
T |
|
| Q |
116 |
ttttatttttcatgtagacaactggtggcataagggcaccccaaaatggtgaagtcaaaagttctaaaggcagctttacaaaggtaatatacatctctcg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
649622 |
ttttatttttcatgtagacaactggtggcataagggcaccccaaaatggtgaagtcaaaagttctaaaggaagctttacaaaggtaatatacatctctcg |
649721 |
T |
|
| Q |
216 |
tgtttggcctatttgttctcttgtctgttttcagaattttggactggagaaatgatatttaaacaactannnnnnnacaacttttgtgacaactttctct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| | |||||||||||||||||||||||| |
|
|
| T |
649722 |
tgtttggcctatttgttctcttgtctgttttcagcattttggaccggagaaatgatatttgaacaaccatttttttacaacttttgtgacaactttctct |
649821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 238785 - 238708
Alignment:
| Q |
16 |
cacatggaaggtattcatgtttccttatcaatgcaattgctattgnnnnnnnctttag--gtcttattttaatattct |
91 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| |
|
|
| T |
238785 |
cacatggaatgtattcatgtttccttatcaatgcaatggctattgcttttttctttaggtgtcttattttaatattct |
238708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 45293100 - 45293047
Alignment:
| Q |
262 |
gagaaatgatatttaaacaactannnnnnnacaacttttgtgacaactttctct |
315 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45293100 |
gagaaatgatatttaaacaactatttttaaacaacttttgtgacaactttctct |
45293047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University