View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15426_low_30 (Length: 307)
Name: NF15426_low_30
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 297
Target Start/End: Complemental strand, 30719026 - 30718748
Alignment:
| Q |
19 |
aaaaagtcttgcttgtgaatgggcgaaagacaacatcaggagcaactgtgtcgcaccctggtatacaaaaacaccacttgtggaacatgtaatgctcttt |
118 |
Q |
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| T |
30719026 |
aaaaagtcttgcttgtgaatgggcgaaagacaacataaggagcaactgtgtcgcaccctggtatacaaaaacaccacttgtggaacatgtaatgctcttt |
30718927 |
T |
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| Q |
119 |
cacaccttcaattattcattctgtggctttgtcannnnnnnnnnatgaagattgtttgaatttgtaatgttcatttgatttggatgaaatgactgattgg |
218 |
Q |
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| T |
30718926 |
cacaccttcaattattcattctgtggctttgtcattttttttttatgaagattgtttgaatttgtaatgatcatttgatttgtatgaaatgactgattgg |
30718827 |
T |
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| Q |
219 |
tcgttgtttaatcggaggtgtatggtatggtattcttctattttgttattgggttttttatagtaaataatgatctgtg |
297 |
Q |
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| T |
30718826 |
tcattgtttaatcggaggtgtatggtatggtattcttctattttgttattgggttctttatagtaaataatgacctgtg |
30718748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 30706029 - 30705936
Alignment:
| Q |
25 |
tcttgcttgtgaatgggcgaaagacaacatcaggagcaactgtgtcgcaccctggtatacaaaaacaccacttgtggaacatgtaatgctcttt |
118 |
Q |
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| T |
30706029 |
tcttgcttgtgaatgggcaaaagacaatataaggagcaactgtgttgcaccgtggtatacaaaaacatcgcttgtggaacaggtaatgctcttt |
30705936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 30699189 - 30699120
Alignment:
| Q |
24 |
gtcttgcttgtgaatgggcgaaagacaacatcaggagcaactgtgtcgcaccctggtatacaaaaacacc |
93 |
Q |
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| T |
30699189 |
gtcttgcttgtgaatgggcaaaagacaatataaggatcaattgcgtcgcgccttggtatacaaaaacacc |
30699120 |
T |
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