View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15426_low_34 (Length: 285)
Name: NF15426_low_34
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 267
Target Start/End: Original strand, 46899330 - 46899589
Alignment:
| Q |
11 |
cacagaagagaaagaataagcgagaaaataagaatactgcaaagaatggtaccaggtggaactaaaatggatactgcatcaatgttggatgaagctattc |
110 |
Q |
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| T |
46899330 |
cacagaagagaaagaataagcgagaaaataagaatactgcaaagaatggtaccaggtggaactaaaatggatactgcatcaatgttggatgaagctattc |
46899429 |
T |
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| Q |
111 |
attatgttaagtttctcaagacacaacttaagtcactgcaggaacgtgcttcaggagccaacagtaacaggacagttgcaggttcaggattagggttccc |
210 |
Q |
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| T |
46899430 |
attatgttaagtttctcaagacacaacttaagtcactgcaggaacgtgcttcaggagccaacagtaacaggacagttgctggttcaggattagggttccc |
46899529 |
T |
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| Q |
211 |
tgtttcattgcctaagcc---ttaccaagatcgtaatgttgatcgttatgggtgataaat |
267 |
Q |
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| T |
46899530 |
tgtttcattgcctaagcctaattaccaagatcgtaatgttgatcgttatgggtgataaat |
46899589 |
T |
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 6259607 - 6259717
Alignment:
| Q |
14 |
agaagagaaagaataagcgagaaaataagaatactgcaaagaatggtaccaggtggaactaaaatggatactgcatcaatgttggatgaagctattcatt |
113 |
Q |
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| T |
6259607 |
agaagagaaagaattagtgaaagaataaggatattacaaagattagtacctggtggaacaaaaatggacactgcttctatgttagatgaagcaatacatt |
6259706 |
T |
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| Q |
114 |
atgttaagttt |
124 |
Q |
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|||| |||||| |
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| T |
6259707 |
atgtgaagttt |
6259717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 124
Target Start/End: Original strand, 39073513 - 39073623
Alignment:
| Q |
14 |
agaagagaaagaataagcgagaaaataagaatactgcaaagaatggtaccaggtggaactaaaatggatactgcatcaatgttggatgaagctattcatt |
113 |
Q |
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|||||||||||||| || ||||| || | || || |||||| | || || |||||||||||||||||||| || || ||| | |||||||| |||| || |
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| T |
39073513 |
agaagagaaagaatcagtgagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatacagcttctatgcttgatgaagccattcgtt |
39073612 |
T |
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| Q |
114 |
atgttaagttt |
124 |
Q |
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||||||||||| |
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| T |
39073613 |
atgttaagttt |
39073623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 25645243 - 25645177
Alignment:
| Q |
65 |
ggtggaactaaaatggatactgcatcaatgttggatgaagctattcattatgttaagtttctcaaga |
131 |
Q |
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||||||| |||| | ||||||| || |||||||| |||||||||||||||||||||||||| |||| |
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| T |
25645243 |
ggtggaagtaaattagatactgtttctatgttggaggaagctattcattatgttaagtttcttaaga |
25645177 |
T |
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