View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15426_low_37 (Length: 272)
Name: NF15426_low_37
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 27231387 - 27231258
Alignment:
| Q |
7 |
gagatgaatccacaatgcagatcatatagtctattaaatcccatcaaattgatgaatttgatcttatttatttggttaaatattttttcctccttataaa |
106 |
Q |
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| T |
27231387 |
gagatgaatccacaatggagatcatatagtctattaaatcccatcaaattgatgaatttgatcttatttatttggttaaatattttttcctccttataaa |
27231288 |
T |
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| Q |
107 |
taaataagagaaatattgttttgaatagtg |
136 |
Q |
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| T |
27231287 |
taaataagagaaatattgttttgaatagtg |
27231258 |
T |
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Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 36 - 132
Target Start/End: Complemental strand, 27270782 - 27270686
Alignment:
| Q |
36 |
tctattaaatcccatcaaattgatgaatttgatcttatttatttggttaaatattttttcctccttataaataaataagagaaatattgttttgaat |
132 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27270782 |
tctattaaatcccatcaaattgatgaatttgatcttatttatttggttaaatattttttcctccttataaataaataagagaaatattgttttgaat |
27270686 |
T |
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