View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15426_low_4 (Length: 789)

Name: NF15426_low_4
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15426_low_4
NF15426_low_4
[»] chr7 (13 HSPs)
chr7 (297-531)||(38611280-38611514)
chr7 (297-529)||(37751037-37751270)
chr7 (346-531)||(37735550-37735738)
chr7 (583-762)||(38611616-38611795)
chr7 (619-764)||(37735291-37735436)
chr7 (155-264)||(37751334-37751443)
chr7 (158-274)||(37735820-37735936)
chr7 (610-764)||(37750760-37750914)
chr7 (158-264)||(38611128-38611234)
chr7 (20-134)||(37754630-37754744)
chr7 (20-134)||(37760604-37760718)
chr7 (20-134)||(37738773-37738886)
chr7 (20-106)||(38605965-38606051)
[»] chr2 (2 HSPs)
chr2 (19-63)||(5809261-5809305)
chr2 (730-766)||(5808706-5808742)


Alignment Details
Target: chr7 (Bit Score: 120; Significance: 6e-61; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 297 - 531
Target Start/End: Original strand, 38611280 - 38611514
Alignment:
Q  297 tatggttgttttacaaagacatcttttaattatt-tttgttggtttggtttataggggactgttttggacagtcatgctcttattttacaactttgtcat 395  Q
    ||||||||||||||||||  ||  |||||||||| ||| || |||| |  |||||||| |||||||||||||| |||||| ||||||||||| |||||||    
T  38611280 tatggttgttttacaaaggaattgtttaattattatttttttgttt-gagtatagggggctgttttggacagttatgctcatattttacaaccttgtcat 38611378  T
Q  396 gtcaagaatgataagaaagtaaaaaagagagttgagaaagacaagagttcaactaagttgcttgtgaaaaatattccttttgaggcaacaaagaaggatc 495  Q
    |||||||||| |   |||||| |||||| |||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||    
T  38611379 gtcaagaatgttggtaaagtacaaaagaaagttgagaaagacaagagttcaactaagttgcttgtgagaaatgttgcttttgaggcaacaaagaaggatc 38611478  T
Q  496 tgagacaattgtttagcccgtttgggcaggtgatta 531  Q
    ||||||| || |||||||| ||||| ||||||||||    
T  38611479 tgagacagttatttagcccatttggccaggtgatta 38611514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 297 - 529
Target Start/End: Complemental strand, 37751270 - 37751037
Alignment:
Q  297 tatggttgttttacaaagacatcttttaattatttttgttggtttggtttataggggactgttttggacagtcatgctcttattttacaactttgtcatg 396  Q
    |||||||||||||||||| | | |||| | || | || ||||||||| | ||||||||||||||||||| |||||||||||||||||| ||| |||||||    
T  37751270 tatggttgttttacaaaggcttttttttaataatctttttggtttgggt-ataggggactgttttggacggtcatgctcttattttactactctgtcatg 37751172  T
Q  397 tcaagaatgataagaaagt--aaaaaagagagttgagaaagacaagagttcaactaagttgcttgtgaaaaatattccttttgaggcaacaaagaaggat 494  Q
    |||||||||||   |||||  | |||||| |||||||||||| ||||||||||||| ||||| |||||||||| ||  ||||||||||| ||||||||||    
T  37751171 tcaagaatgatggtaaagtgtacaaaagaaagttgagaaagataagagttcaactacgttgcatgtgaaaaatgttgtttttgaggcaataaagaaggat 37751072  T
Q  495 ctgagacaattgtttagcccgtttgggcaggtgat 529  Q
    ||||||||||| |||||||||||||| ||||||||    
T  37751071 ctgagacaattatttagcccgtttggccaggtgat 37751037  T

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Target: chr7; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 346 - 531
Target Start/End: Complemental strand, 37735738 - 37735550
Alignment:
Q  346 tataggggactgttttggacagtcatgctcttattttacaactttgtcatgtcaagaatgataag---aaagtaaaaaagagagttgagaaagacaagag 442  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |    |||||| |||||| |||||||||||| |||||    
T  37735738 tataggggactgttttggacggtcatgctcttattttacaactctgtcatgtcaagaatgatgatgataaagtacaaaagaaagttgagaaagataagag 37735639  T
Q  443 ttcaactaagttgcttgtgaaaaatattccttttgaggcaacaaagaaggatctgagacaattgtttagcccgtttgggcaggtgatta 531  Q
    |||||| ||||| |||||||||||| || | |||||||||||| ||||||| ||||||||||| |||||||||||||| ||||||||||    
T  37735638 ttcaaccaagttacttgtgaaaaatgttgcctttgaggcaacagagaaggacctgagacaattatttagcccgtttggccaggtgatta 37735550  T

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Target: chr7; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 583 - 762
Target Start/End: Original strand, 38611616 - 38611795
Alignment:
Q  583 ttccttccattcatgtttgttggctcgaaaccatgaagattaaatgtttaaaattgccaatgaagtttggaaattatagaggctatgcttttgttgagta 682  Q
    |||||| || ||||||||| |||||  ||||| || ||||||||   ||||||||||||||||||||||||||| ||||||||| ||||||||| |||||    
T  38611616 ttcctttcactcatgtttgatggcttaaaaccgtgcagattaaaaaattaaaattgccaatgaagtttggaaatcatagaggctttgcttttgtggagta 38611715  T
Q  683 tgttacccagcaggaggcacaaagtgctcttacagctctctcaagcacccaattgtatggccgacatcttgtaagtgaaa 762  Q
    |||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||| ||||||||||    
T  38611716 tgttactcagcaggaggcacaaaatgctcttacagcactctcaagcacccacttgtatggcagacatctggtaagtgaaa 38611795  T

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Target: chr7; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 619 - 764
Target Start/End: Complemental strand, 37735436 - 37735291
Alignment:
Q  619 agattaaatgtttaaaattgccaatgaagtttggaaattatagaggctatgcttttgttgagtatgttacccagcaggaggcacaaagtgctcttacagc 718  Q
    |||||||| |||||| ||| |||||||||||||||||| ||||||| | ||||||||| ||||||||||| |||||||||||||||| ||| ||||||||    
T  37735436 agattaaaagtttaagattaccaatgaagtttggaaatcatagaggatttgcttttgtggagtatgttactcagcaggaggcacaaaatgcacttacagc 37735337  T
Q  719 tctctcaagcacccaattgtatggccgacatcttgtaagtgaaact 764  Q
     |||||||| ||||| ||||||||| ||||||| ||||||||||||    
T  37735336 actctcaagtacccacttgtatggcagacatctggtaagtgaaact 37735291  T

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Target: chr7; HSP #6
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 155 - 264
Target Start/End: Complemental strand, 37751443 - 37751334
Alignment:
Q  155 gaagaagaagaatttgaaaaatgggaaaaatgtttctattgggtttggatttgttgagtttgactccacagagactgctacaagtgtttgctgcgattta 254  Q
    |||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||    
T  37751443 gaagaagaagcatttgaaaaatgggaaaaatgtttctatgggatttggatttgttgagtttgactccacagagactgctacaagtgtttgcaatgattta 37751344  T
Q  255 caggtattta 264  Q
    ||||||||||    
T  37751343 caggtattta 37751334  T

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Target: chr7; HSP #7
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 37735936 - 37735820
Alignment:
Q  158 gaagaagaatttgaaaaatgggaaaaatgtttctattgggtttggatttgttgagtttgactccacagagactgctacaagtgtttgctgcgatttacag 257  Q
    ||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||    
T  37735936 gaagaagcatttgaaaaatgggaaaaatgtttctatgggatttggatttgttgagtttgactccacagagactgctacgagtgtttgcaacgatttacag 37735837  T
Q  258 gtatttaaacatttgaa 274  Q
    ||||||  |||||||||    
T  37735836 gtatttgcacatttgaa 37735820  T

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Target: chr7; HSP #8
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 610 - 764
Target Start/End: Complemental strand, 37750914 - 37750760
Alignment:
Q  610 aaaccatgaagattaaatgtttaaaattgccaatgaagtttggaaattatagaggctatgcttttgttgagtatgttacccagcaggaggcacaaagtgc 709  Q
    ||||| || |||||||| |||||| ||| |||||||||||||||||| ||||||| | ||||||||| ||||||||||| |||||||||||||||| |||    
T  37750914 aaaccgtgcagattaaaagtttaagattaccaatgaagtttggaaatcatagaggatttgcttttgtggagtatgttactcagcaggaggcacaaaatgc 37750815  T
Q  710 tcttacagctctctcaagcacccaattgtatggccgacatcttgtaagtgaaact 764  Q
     |||||||| |||||||| ||||| ||||||||  ||||||| ||||||||||||    
T  37750814 acttacagcactctcaagtacccacttgtatggaagacatctggtaagtgaaact 37750760  T

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Target: chr7; HSP #9
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 158 - 264
Target Start/End: Original strand, 38611128 - 38611234
Alignment:
Q  158 gaagaagaatttgaaaaatgggaaaaatgtttctattgggtttggatttgttgagtttgactccacagagactgctacaagtgtttgctgcgatttacag 257  Q
    ||||||| |||||||||| ||||||||||||||||| || |||||||||||||||||||||||  |||||||||||||||||||||||  ||||||||||    
T  38611128 gaagaagcatttgaaaaaagggaaaaatgtttctatgggatttggatttgttgagtttgactctgcagagactgctacaagtgtttgcaacgatttacag 38611227  T
Q  258 gtattta 264  Q
    |||||||    
T  38611228 gtattta 38611234  T

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Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 37754744 - 37754630
Alignment:
Q  20 ctagttctgttataatctctatttaatttttcattcgtttatgtctcaatccaactttcaatcgtatttcgtctttcagaatatgtgtttggagaaaagt 119  Q
    |||||| | ||||||| |||| | || |||||||||  |||| ||||||| |||||||| || ||||||| ||||||| |||||||| |||  ||| |||    
T  37754744 ctagttttattataatttctaataaagttttcattcaattatttctcaattcaactttcgatagtatttcttctttcataatatgtggttgtggaacagt 37754645  T
Q  120 cttgtgtcctaatat 134  Q
    |||||||||| ||||    
T  37754644 cttgtgtcctgatat 37754630  T

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Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 37760718 - 37760604
Alignment:
Q  20 ctagttctgttataatctctatttaatttttcattcgtttatgtctcaatccaactttcaatcgtatttcgtctttcagaatatgtgtttggagaaaagt 119  Q
    |||||| | ||||||| |||| | || |||||||||  |||| ||||||| |||||||| || ||||||| ||||||| |||||||| |||  ||| |||    
T  37760718 ctagttttattataatttctaataaagttttcattcaattatttctcaattcaactttcgatagtatttcttctttcataatatgtggttgtggaacagt 37760619  T
Q  120 cttgtgtcctaatat 134  Q
    |||||||||| ||||    
T  37760618 cttgtgtcctgatat 37760604  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 37738886 - 37738773
Alignment:
Q  20 ctagttctgttataatctctatttaatttttcattcgtttatgtctcaatccaactttcaatcgtatttcgtctttcagaatatgtgtttggagaaaagt 119  Q
    |||||| ||||||||| |||| | || ||||  |||  |||||||| ||| |||||||||| |||||||| |||| || |||||||| |||  ||| |||    
T  37738886 ctagttttgttataatttctactaaagttttgtttcaattatgtcttaattcaactttcaa-cgtatttcttcttccataatatgtggttgtggaacagt 37738788  T
Q  120 cttgtgtcctaatat 134  Q
    |||||||||||||||    
T  37738787 cttgtgtcctaatat 37738773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 38605965 - 38606051
Alignment:
Q  20 ctagttctgttataatctctatttaatttttcattcgtttatgtctcaatccaactttcaatcgtatttcgtctttcagaatatgtg 106  Q
    |||||| | ||||||| |||| | || |||||||||  |||||||| ||| ||||||||||| ||||||| ||||||| ||||||||    
T  38605965 ctagttttattataatttctaataaagttttcattcaattatgtcttaattcaactttcaatagtatttcttctttcataatatgtg 38606051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 5809305 - 5809261
Alignment:
Q  19 actagttctgttataatctctatttaatttttcattcgtttatgt 63  Q
    |||| |||||||||||||||||||||||||||||||| |||||||    
T  5809305 actacttctgttataatctctatttaatttttcattcctttatgt 5809261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 730 - 766
Target Start/End: Complemental strand, 5808742 - 5808706
Alignment:
Q  730 cccaattgtatggccgacatcttgtaagtgaaactat 766  Q
    |||||||||||||| ||||||||||||||||||||||    
T  5808742 cccaattgtatggcagacatcttgtaagtgaaactat 5808706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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