View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15426_low_40 (Length: 258)

Name: NF15426_low_40
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15426_low_40
NF15426_low_40
[»] chr7 (4 HSPs)
chr7 (19-174)||(5178403-5178559)
chr7 (169-247)||(5177547-5177625)
chr7 (213-247)||(8306000-8306034)
chr7 (213-247)||(8552609-8552643)
[»] chr8 (11 HSPs)
chr8 (18-165)||(5194817-5194965)
chr8 (18-165)||(5199121-5199270)
chr8 (18-146)||(5177399-5177529)
chr8 (30-146)||(5184714-5184824)
chr8 (188-246)||(5175052-5175110)
chr8 (193-246)||(5193942-5193995)
chr8 (187-246)||(5204201-5204260)
chr8 (18-145)||(5206823-5206956)
chr8 (210-246)||(1797164-1797200)
chr8 (199-246)||(6230636-6230683)
chr8 (199-246)||(5183638-5183685)
[»] chr4 (1 HSPs)
chr4 (213-246)||(49611093-49611126)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 5178559 - 5178403
Alignment:
Q  19 taaatgcatgcgtctgacataaaacggaaacatggcaatacaatttttactatttctattaaataggacaatcgccaattgttggaagcatggtctaa-a 117  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  5178559 taaatgcatgcgtctgacataaaacggaaacatgggaatacaatttttaccatttctattaaataggacaatcgccaattgttggaagcatggtctaata 5178460  T
Q  118 ctatatgaacatgggagacaatgacatacggtacctcgatgaatgctcctttagggt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5178459 ctatatgaacatgggagacaatgacatacggtacctcgatgaatgctcctttggggt 5178403  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 5177625 - 5177547
Alignment:
Q  169 tagggtctgaactaccagcaccaacaccgtaatatacagacgataatagatttggagcatcaatgttgacctccttcat 247  Q
    |||||||||||||||||  |||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  5177625 tagggtctgaactaccacaaccaacactgtaatatacaaacgataatagatttggagcatcaatgttgatctccttcat 5177547  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 8306034 - 8306000
Alignment:
Q  213 aatagatttggagcatcaatgttgacctccttcat 247  Q
    ||||||||||||||||||||||||||||| |||||    
T  8306034 aatagatttggagcatcaatgttgacctctttcat 8306000  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 8552609 - 8552643
Alignment:
Q  213 aatagatttggagcatcaatgttgacctccttcat 247  Q
    ||||||||||||||||||||||||||||| |||||    
T  8552609 aatagatttggagcatcaatgttgacctctttcat 8552643  T

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Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 5194965 - 5194817
Alignment:
Q  18 ataaatgcatgcgtctgacataaaacggaaacatggcaatacaatttttactatttctattaaataggacaatcgccaattgttggaagcatggtctaa- 116  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||     
T  5194965 ataaatgcatgtgtctgacataaaatggaaacatgacaatacaatttttactttttctattatataggacaatcgccaattgttggaagcatggtctaat 5194866  T
Q  117 actatatgaacatgggagacaatgacatacggtacctcgatgaatgctc 165  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5194865 actatatgaacatgggagacaatgacatacggtacctcaatgaatgctc 5194817  T

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Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 5199121 - 5199270
Alignment:
Q  18 ataaatgcatgcgtctg-acataaaacggaaacatggcaatacaatttttactatttctattaaataggacaatcgccaattgttggaagcatggtctaa 116  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||  ||||||  ||||||||||||| ||||||||  ||||||||||||||||||||||    
T  5199121 ataaatgcatgtgtctgcacataaaacagaaacatggcaatacatgttttaccttttctattaaataagacaatcggaaattgttggaagcatggtctaa 5199220  T
Q  117 -actatatgaacatgggagacaatgacatacggtacctcgatgaatgctc 165  Q
     ||||||||||||||||||||||||||||| |||||| | ||||||||||    
T  5199221 tactatatgaacatgggagacaatgacatatggtaccacaatgaatgctc 5199270  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 5177529 - 5177399
Alignment:
Q  18 ataaatgcatgcgtctgacataaaacggaaacat---ggcaatacaatttttactatttctattaaataggacaatcgccaattgttggaagcatggtct 114  Q
    |||||||||||  |||||||||||||||||||||   | ||||||||||||| || |||| |||||||||||||||| |||||||| |||||||||||||    
T  5177529 ataaatgcatgt-tctgacataaaacggaaacatcatgacaatacaattttt-ctttttcgattaaataggacaatcaccaattgtaggaagcatggtct 5177432  T
Q  115 aa-actatatgaacatgggagacaatgacatac 146  Q
    || ||||||||||||| ||||||||||||||||    
T  5177431 aatactatatgaacataggagacaatgacatac 5177399  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 5184824 - 5184714
Alignment:
Q  30 gtctgacataaaacggaaacatggcaatacaatttttactatttctattaaataggacaatcgccaattgttggaagcatggtctaaactatatgaacat 129  Q
    ||||||||||||| |  ||||||| ||| ||||||||||| |||  |||||||||||||||| |||||||| ||||||||||||      | ||||||||    
T  5184824 gtctgacataaaatgataacatggtaatgcaatttttacttttttgattaaataggacaatcaccaattgtaggaagcatggtc------acatgaacat 5184731  T
Q  130 gggagacaatgacatac 146  Q
    | |||||||||||||||    
T  5184730 gcgagacaatgacatac 5184714  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 246
Target Start/End: Complemental strand, 5175110 - 5175052
Alignment:
Q  188 accaacaccgtaatatacagacgataatagatttggagcatcaatgttgacctccttca 246  Q
    |||||||||| |||||||| || ||||||||||||| ||||||||||||||||||||||    
T  5175110 accaacaccgcaatatacacacaataatagatttggcgcatcaatgttgacctccttca 5175052  T

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Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 5193995 - 5193942
Alignment:
Q  193 caccgtaatatacagacgataatagatttggagcatcaatgttgacctccttca 246  Q
    |||||| ||||||| | |||||||||||||||||||||||||||||||||||||    
T  5193995 caccgtgatatacacatgataatagatttggagcatcaatgttgacctccttca 5193942  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 5204260 - 5204201
Alignment:
Q  187 caccaacaccgtaatatacagacgataatagatttggagcatcaatgttgacctccttca 246  Q
    ||||| |||| ||| ||||| ||||||||||||||||||| |||||||||||||||||||    
T  5204260 caccaccaccataaaatacacacgataatagatttggagcgtcaatgttgacctccttca 5204201  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 5206956 - 5206823
Alignment:
Q  18 ataaatgcatgcgtctgacataaaacggaaacatggcaatacaatttttactatttctattaa-----ataggacaatcgccaattgttggaagcatggt 112  Q
    ||||||| ||| ||||||||||||||| ||||||||||||| | ||||| || |||| || ||     ||||||||||| |||  ||| ||||||||| |    
T  5206956 ataaatggatgtgtctgacataaaacgaaaacatggcaatatagttttttctttttcaatgaaataggataggacaatcaccatatgtaggaagcatgtt 5206857  T
Q  113 ct-aaactatatgaacatgggagacaatgacata 145  Q
    || ||| ||||| || ||||||||||||||||||    
T  5206856 ctgaaattatataaatatgggagacaatgacata 5206823  T

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Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 1797164 - 1797200
Alignment:
Q  210 gataatagatttggagcatcaatgttgacctccttca 246  Q
    |||||||||||||||||||||||||||||||||||||    
T  1797164 gataatagatttggagcatcaatgttgacctccttca 1797200  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 6230683 - 6230636
Alignment:
Q  199 aatatacagacgataatagatttggagcatcaatgttgacctccttca 246  Q
    |||||||| ||||||||||||||||||||||||| || ||||||||||    
T  6230683 aatatacacacgataatagatttggagcatcaatattaacctccttca 6230636  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 5183685 - 5183638
Alignment:
Q  199 aatatacagacgataatagatttggagcatcaatgttgacctccttca 246  Q
    |||||||| | ||||||||||||||||||||||| || ||||||||||    
T  5183685 aatatacacatgataatagatttggagcatcaatattaacctccttca 5183638  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 246
Target Start/End: Complemental strand, 49611126 - 49611093
Alignment:
Q  213 aatagatttggagcatcaatgttgacctccttca 246  Q
    ||||||||||||||||||||||| ||||||||||    
T  49611126 aatagatttggagcatcaatgttaacctccttca 49611093  T

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