View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15426_low_41 (Length: 256)
Name: NF15426_low_41
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_low_41 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 41108060 - 41108304
Alignment:
| Q |
12 |
aagaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41108060 |
aagaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttac |
41108159 |
T |
|
| Q |
112 |
gtttacaccctccagctccaatgttgcttcctaggaaagcaagggtagatgtggaaatagcaggttacacaattccaaaaggtgcacaagttctgatcaa |
211 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41108160 |
gtttacaccctccagctccaatgttacttcctaggaaagcaagggtagatgtggaaatagcaggttacacaattccaaaaggtgcacaagttctgatcaa |
41108259 |
T |
|
| Q |
212 |
tgaatgggctattggtagaacagacatatgggatgatgctcattt |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41108260 |
tgaatgggctattggtagaacagacatatgggatgatgctcattt |
41108304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 41129184 - 41129428
Alignment:
| Q |
12 |
aagaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41129184 |
aagaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttac |
41129283 |
T |
|
| Q |
112 |
gtttacaccctccagctccaatgttgcttcctaggaaagcaagggtagatgtggaaatagcaggttacacaattccaaaaggtgcacaagttctgatcaa |
211 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41129284 |
gtttacaccctccagctccaatgttacttcctaggaaagcaagggtagatgtggaaatagcaggttacacaattccaaaaggtgcacaagttctgatcaa |
41129383 |
T |
|
| Q |
212 |
tgaatgggctattggtagaacagacatatgggatgatgctcattt |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41129384 |
tgaatgggctattggtagaacagacatatgggatgatgctcattt |
41129428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 41143499 - 41143255
Alignment:
| Q |
12 |
aagaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41143499 |
aagaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttac |
41143400 |
T |
|
| Q |
112 |
gtttacaccctccagctccaatgttgcttcctaggaaagcaagggtagatgtggaaatagcaggttacacaattccaaaaggtgcacaagttctgatcaa |
211 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41143399 |
gtttacaccctccagctccaatgttacttcctaggaaagcaagggtagatgtggaaatagcaggttacacaattccaaaaggtgcacaagttctgatcaa |
41143300 |
T |
|
| Q |
212 |
tgaatgggctattggtagaacagacatatgggatgatgctcattt |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41143299 |
tgaatgggctattggtagaacagacatatgggatgatgctcattt |
41143255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 12 - 256
Target Start/End: Complemental strand, 41119357 - 41119113
Alignment:
| Q |
12 |
aagaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41119357 |
aagaaggaattagaggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttac |
41119258 |
T |
|
| Q |
112 |
gtttacaccctccagctccaatgttgcttcctaggaaagcaagggtagatgtggaaatagcaggttacacaattccaaaaggtgcacaagttctgatcaa |
211 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41119257 |
gtttacaccctccagctccaatgttacttcctaggaaagcaagggtagatgtggaaatagcaggttacacaattccaaaaggtgcacaagttctgatcaa |
41119158 |
T |
|
| Q |
212 |
tgaatgggctattggtagaacagacatatgggatgatgctcattt |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41119157 |
tgaatgggctattggtagaacagacatatgggatgatgcacattt |
41119113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 26 - 256
Target Start/End: Original strand, 41035668 - 41035898
Alignment:
| Q |
26 |
ggaaaccattggattaggcaaaccaattgaggaatcagatattgataggcttccatacttgaatgcagtgataaaagagagtttacgtttacaccctcca |
125 |
Q |
| |
|
|||||||||||||| | |||||| |||||| |||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41035668 |
ggaaaccattggatcatgcaaactaattgaagaatcagacattgataggcttccatacttgcaagcagtgataaaagagagtttacgcttacaccctcca |
41035767 |
T |
|
| Q |
126 |
gctccaatgttgcttcctaggaaagcaagggtagatgtggaaatagcaggttacacaattccaaaaggtgcacaagttctgatcaatgaatgggctattg |
225 |
Q |
| |
|
|||||| | ||||| || | ||||| || ||||||||| ||||||||| ||||| |||||||| ||||||||| ||| ||| |||||||||||||||| |
|
|
| T |
41035768 |
gctccacttttgctcccacgtaaagctagagtagatgtgcaaatagcagtgtacactattccaaagggtgcacaaattcggataaatgaatgggctattg |
41035867 |
T |
|
| Q |
226 |
gtagaacagacatatgggatgatgctcattt |
256 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| |
|
|
| T |
41035868 |
gtagaacaaacatatgggatgatgctgattt |
41035898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University