View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15426_low_43 (Length: 250)
Name: NF15426_low_43
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 71 - 242
Target Start/End: Complemental strand, 12279235 - 12279068
Alignment:
| Q |
71 |
cataacatatgaaaatgtgacaagacaatatataattaaacctattaatgtac----tacttagaaacgtaacattaagtttccgatagcttaattaagc |
166 |
Q |
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| T |
12279235 |
cataacatatgaaaatgtgacaagacaatatataattaaac---ttaatgtactacttacttagaaacataacataaagttt-caatagc----ttaagc |
12279144 |
T |
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| Q |
167 |
ctaaaggggtgtttgtttcatggttgtaaaaataattcccaagaatatggaagttacaaagaagggttcctatgct |
242 |
Q |
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| T |
12279143 |
ctaaaggggcgtttgtttcatggttgtaaaaataattcccaagaatatggaagttacaaagaagggttcctatgct |
12279068 |
T |
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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 12284594 - 12284520
Alignment:
| Q |
1 |
tgttaacaatataaggttttagagataataacaaagaagacactatggttccaataatatatatcaatggcataa |
75 |
Q |
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| T |
12284594 |
tgttaacaatataaggttttagagataataacaaagaagacactatggttccaataatatatatcaatggcataa |
12284520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 27039156 - 27039220
Alignment:
| Q |
176 |
tgtttgtttcatggttgtaaaaataattcccaagaatatggaagttacaaagaagggttcctatg |
240 |
Q |
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| T |
27039156 |
tgtttgtttcgtggttgtaaaaattatttccaggaatatggatgttagaaagatgggttcctatg |
27039220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 226
Target Start/End: Complemental strand, 1541422 - 1541369
Alignment:
| Q |
174 |
ggtgtttgtttcatggtt-gtaaaaataattcccaagaatatggaagttacaaa |
226 |
Q |
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| T |
1541422 |
ggtgtttgtttcatggtttgtaaaaattattcactagaatatagaagttacaaa |
1541369 |
T |
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