View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15426_low_44 (Length: 246)
Name: NF15426_low_44
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_low_44 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 56069708 - 56069935
Alignment:
| Q |
1 |
cgagaaattaacagcagatgcatttaactcaattttgtcaagttttggaaaagtaaattaactaaagtgtgcttaccagtttctgccatttgtggtacac |
100 |
Q |
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| T |
56069708 |
cgagaaattaacagcagatgcatttaactcaattttgtcaagttttggaaaagtaaattaa----agtgtgcttaccagtttctgccatttgtggtacac |
56069803 |
T |
|
| Q |
101 |
ctctgtgatgttttgcttcttccattcaactaaatcaaaaacattcatacataccgtatgcccatccacaagcacgagggtcaaaattctttgcaacaag |
200 |
Q |
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| T |
56069804 |
ctctgtgatgttttgcttcttccattcaactaaatcaaaaacattcatacataccgtatgcccatccacaagcacgagggtcaaaattctttgcaacaag |
56069903 |
T |
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| Q |
201 |
aggatttgagaagttgaggtaaccatcaaaac |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
56069904 |
aggatttgagaagttgaggtaaccatcaaaac |
56069935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 38398594 - 38398389
Alignment:
| Q |
16 |
agatgcatttaactcaattttgtcaagttttggaaaagtaaattaactaaagtgtgcttaccagtttctgccatttgtggtacacctctgtgatgttttg |
115 |
Q |
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| T |
38398594 |
agatgcatttcactcaattttgtgatgttttggaaaagtagattaa----agtgt-cttaccagcttctgccaattgtggtacacctctgtgatgttttg |
38398500 |
T |
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| Q |
116 |
cttcttccattcaactaaatcaaaaacattcatacataccgtatgcccatccacaagcacgagggtcaaaattctttgcaacaagaggatttgagaagtt |
215 |
Q |
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| T |
38398499 |
cttcttccattcgactaaatcaaaaacattcatac----catatgcccatccacaagcacgagggtcaaaattctttgcaacaagaggatttgagaagtt |
38398404 |
T |
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| Q |
216 |
gaggtaaccatcaaa |
230 |
Q |
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| T |
38398403 |
aaggtaactatcaaa |
38398389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 72 - 230
Target Start/End: Complemental strand, 10170667 - 10170513
Alignment:
| Q |
72 |
cttaccagtttctgccatttgtggtacacctctgtgatgttttgcttcttccattcaactaaatcaaaaacattcatacataccgtatgcccatccacaa |
171 |
Q |
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||||||| |||||||| |||||||||||||||||||| |||||| ||||||||| ||||||||||| |||||||| | |||| ||||| |||||| |
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| T |
10170667 |
cttaccaaattctgccagttgtggtacacctctgtgatcttttgcctcttccattggactaaatcaaatacattcattc----cgtaggcccacccacaa |
10170572 |
T |
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| Q |
172 |
gcacgagggtcaaaattctttgcaacaagaggatttgagaagttgaggtaaccatcaaa |
230 |
Q |
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||| |||| |||||||||||||||| |||||||||||||||||| || |||| |||||| |
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| T |
10170571 |
gcatgaggatcaaaattctttgcaataagaggatttgagaagttcagataacgatcaaa |
10170513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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