View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15426_low_45 (Length: 243)
Name: NF15426_low_45
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_low_45 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 38184361 - 38184585
Alignment:
| Q |
19 |
actatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatcaccctcctcttctttttgttgcataactttttcatctctaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184361 |
actatcttcccattaacattcctctcaagttcctctctacaacttaactcatcactatcaccctcctcttctttttgttgcataactttttcatctctaa |
38184460 |
T |
|
| Q |
119 |
ttacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacataaac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38184461 |
ttacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacataaac |
38184560 |
T |
|
| Q |
219 |
cacagacgattcatcctttgaatcc |
243 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
38184561 |
cacagacgattcatcctttgaatcc |
38184585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 38179692 - 38179916
Alignment:
| Q |
19 |
actatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatcaccctcctcttctttttgttgcataactttttcatctctaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38179692 |
actatcttcccattaacattcctctcaagctcctctctacaacttaactcatcactatcaccctcctcttctttttgttgcataactttttcatctctaa |
38179791 |
T |
|
| Q |
119 |
ttacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacataaac |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38179792 |
ttacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctattggacaaaatagcaagagtaccaaatgaaacataaac |
38179891 |
T |
|
| Q |
219 |
cacagacgattcatcctttgaatcc |
243 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
38179892 |
cacagacgattcatcctttgaatcc |
38179916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 38169878 - 38170102
Alignment:
| Q |
19 |
actatcttcccattaacattcctctcaagttcctctctacaacttaactcatcgctatcaccctcctcttctttttgttgcataactttttcatctctaa |
118 |
Q |
| |
|
|||||||||||||| | ||| |||||||||||||||||||||| | |||||| |||| | || |||||||||||||| | ||||| |||||||| |
|
|
| T |
38169878 |
actatcttcccattcatattattctcaagttcctctctacaactcagctcatcatcatcaacttcttcttctttttgttgttgtaattttttatctctaa |
38169977 |
T |
|
| Q |
119 |
ttacccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacataaac |
218 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38169978 |
taacccacaagaaagaaaatccagaatccaacaaggcacgtgcaatttcctccatttgtcttttagacaaaacagcaagagtaccaaatgaaacataaac |
38170077 |
T |
|
| Q |
219 |
cacagacgattcatcctttgaatcc |
243 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
38170078 |
aacagacttttcatcctttgaatcc |
38170102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 121 - 229
Target Start/End: Complemental strand, 35053988 - 35053880
Alignment:
| Q |
121 |
acccacaagaaataaaatccagaatccaacaacgcacgtccaatttcctccatttgtctcttggacaaaatagcaagagtaccaaatgaaacataaacca |
220 |
Q |
| |
|
||||||||||| ||||||| |||||||||| ||| || ||||||||||| ||||||||| ||||||| | | ||||||||||||||||||||| |
|
|
| T |
35053988 |
acccacaagaatggaaatccacaatccaacaaagcatgtgcaatttcctccctttgtctctcagacaaaacaaagtaactaccaaatgaaacataaacca |
35053889 |
T |
|
| Q |
221 |
cagacgatt |
229 |
Q |
| |
|
|||| |||| |
|
|
| T |
35053888 |
cagaagatt |
35053880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University