View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15426_low_49 (Length: 228)

Name: NF15426_low_49
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15426_low_49
NF15426_low_49
[»] chr1 (4 HSPs)
chr1 (1-221)||(41108283-41108503)
chr1 (1-221)||(41129407-41129627)
chr1 (1-221)||(41143056-41143276)
chr1 (1-221)||(41118914-41119134)
[»] chr5 (2 HSPs)
chr5 (1-221)||(41035877-41036097)
chr5 (73-205)||(1406500-1406632)
[»] chr2 (3 HSPs)
chr2 (20-194)||(31135187-31135361)
chr2 (20-194)||(31153678-31153852)
chr2 (20-194)||(31131563-31131737)
[»] chr8 (1 HSPs)
chr8 (133-191)||(18094078-18094136)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41108283 - 41108503
Alignment:
Q  1 acatatgggatgatgctcatttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggcagtgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41108283 acatatgggatgatgctcatttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggtagtgg 41108382  T
Q  101 aagacgtatatgtcctggctcaccacttgctgttaggatgttgcatttgatgttgggatcattgatcaactcctttgattggaaacttgaaaataatatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41108383 aagacgtatatgtcctggctcaccacttgctgttaggatgttgcatttgatgttgggatcattgatcaactcctttgattggaaacttgaaaataatatg 41108482  T
Q  201 gaaccaaaggacatgaacttg 221  Q
    |||||||||||||||||||||    
T  41108483 gaaccaaaggacatgaacttg 41108503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41129407 - 41129627
Alignment:
Q  1 acatatgggatgatgctcatttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggcagtgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41129407 acatatgggatgatgctcatttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggcagtgg 41129506  T
Q  101 aagacgtatatgtcctggctcaccacttgctgttaggatgttgcatttgatgttgggatcattgatcaactcctttgattggaaacttgaaaataatatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41129507 aagacgtatatgtcctggctcaccacttgctgttaggatgtttcatttgatgttgggatcattgattaactcctttgattggaaacttgaaaataatatg 41129606  T
Q  201 gaaccaaaggacatgaacttg 221  Q
    |||||||||||||||||||||    
T  41129607 gaaccaaaggacatgaacttg 41129627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 41143276 - 41143056
Alignment:
Q  1 acatatgggatgatgctcatttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggcagtgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41143276 acatatgggatgatgctcatttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggaagtgg 41143177  T
Q  101 aagacgtatatgtcctggctcaccacttgctgttaggatgttgcatttgatgttgggatcattgatcaactcctttgattggaaacttgaaaataatatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41143176 aagacgtatatgtcctggctcaccacttgctgttaggatgttgcatttgatgttgggatcattgattaactcctttgattggaaacttgaaaataatatg 41143077  T
Q  201 gaaccaaaggacatgaacttg 221  Q
    |||||||||||||||||||||    
T  41143076 gaaccaaaggacatgaacttg 41143056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 41119134 - 41118914
Alignment:
Q  1 acatatgggatgatgctcatttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggcagtgg 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41119134 acatatgggatgatgcacatttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggtagtgg 41119035  T
Q  101 aagacgtatatgtcctggctcaccacttgctgttaggatgttgcatttgatgttgggatcattgatcaactcctttgattggaaacttgaaaataatatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41119034 aagacgtatatgtcctggctcaccacttgctgttaggatgttacatttgatgttgggatcattgatcaactcctttgattggaaacttgaaaatgatatg 41118935  T
Q  201 gaaccaaaggacatgaacttg 221  Q
    |||||||||||||||||||||    
T  41118934 gaaccaaaggacatgaacttg 41118914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 41035877 - 41036097
Alignment:
Q  1 acatatgggatgatgctcatttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggcagtgg 100  Q
    ||||||||||||||||| |||| |||||||||||||||||||| || |||||||||||| ||||||||||||| ||||| |||||||| || || |||||    
T  41035877 acatatgggatgatgctgatttattttcaccagaaagatttttaggatctgaaattgatatcaaaggtcgacactttaatcttacaccatttggtagtgg 41035976  T
Q  101 aagacgtatatgtcctggctcaccacttgctgttaggatgttgcatttgatgttgggatcattgatcaactcctttgattggaaacttgaaaataatatg 200  Q
     ||||||||||||||||| |||||| | ||| |||||||| |||||| ||||||||||||| | |||||||| ||| ||||||||||||||||| |||||    
T  41035977 gagacgtatatgtcctggttcaccattggctattaggatgatgcattcgatgttgggatcactaatcaactcatttaattggaaacttgaaaatgatatg 41036076  T
Q  201 gaaccaaaggacatgaacttg 221  Q
    ||||||||| | |||||||||    
T  41036077 gaaccaaagaaaatgaacttg 41036097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 1406632 - 1406500
Alignment:
Q  73 attttaagcttacaccgttcggcagtggaagacgtatatgtcctggctcaccacttgctgttaggatgttgcatttgatgttgggatcattgatcaactc 172  Q
    ||||| |||| || ||||| ||||||||||| || |||||||| ||||  ||  | ||| | |||||||||||  ||||||||||||||||  | |  ||    
T  1406632 attttcagctcacgccgtttggcagtggaaggcgaatatgtcccggcttgcctttggctatgaggatgttgcacatgatgttgggatcattactaatttc 1406533  T
Q  173 ctttgattggaaacttgaaaataatatggaacc 205  Q
     ||||||||||| || |||||| ||||| ||||    
T  1406532 ttttgattggaagctagaaaatgatatgaaacc 1406500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 31135361 - 31135187
Alignment:
Q  20 tttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggcagtggaagacgtatatgtcctggc 119  Q
    |||||||||||||||||| |||||||| || |||||| || |||| || | ||||| | |  | | ||| || || ||||| ||| | |||||||||||     
T  31135361 tttgttttcaccagaaaggtttttggggtcagaaattaatttcaagggccaacattatcaattcataccatttggtagtgggagaagaatatgtcctgga 31135262  T
Q  120 tcaccacttgctgttaggatgttgcatttgatgttgggatcattgatcaactcctttgattggaaacttgaaaat 194  Q
       ||||||||| |||| |||||||||   ||||| ||||||||||| || ||||||||||||||||| ||||||    
T  31135261 atgccacttgctattagaatgttgcatacaatgttaggatcattgattaattcctttgattggaaactggaaaat 31135187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 31153678 - 31153852
Alignment:
Q  20 tttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggcagtggaagacgtatatgtcctggc 119  Q
    |||||||||||||||||| |||||||| || |||||| || |||| || | ||||| | |  | | ||| || || ||||| ||| | |||||||||||     
T  31153678 tttgttttcaccagaaaggtttttggggtcagaaattaatttcaagggccaacattatcaattcataccatttggtagtgggagaagaatatgtcctgga 31153777  T
Q  120 tcaccacttgctgttaggatgttgcatttgatgttgggatcattgatcaactcctttgattggaaacttgaaaat 194  Q
       ||||||||| |||| |||||||||   ||||| ||||||||||| || ||||||||||||||||| ||||||    
T  31153778 atgccacttgctattagaatgttgcatacaatgttaggatcattgattaattcctttgattggaaactggaaaat 31153852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 31131563 - 31131737
Alignment:
Q  20 tttgttttcaccagaaagatttttgggttctgaaattgatgtcaaaggtcgacattttaagcttacaccgttcggcagtggaagacgtatatgtcctggc 119  Q
    |||||||||||| || |||||||| || ||||||||| || |||| || |   ||||| |  | ||||| || || ||||| ||| | ||||||||||||    
T  31131563 tttgttttcacctgagagatttttagggtctgaaattaatttcaagggccatgattttcaattgacaccatttggtagtgggagaagaatatgtcctggc 31131662  T
Q  120 tcaccacttgctgttaggatgttgcatttgatgttgggatcattgatcaactcctttgattggaaacttgaaaat 194  Q
       ||||||||| |||| |||||||||   ||||| ||||||||||| || | ||||||||||||||| ||||||    
T  31131663 atgccacttgctattagaatgttgcatactatgttaggatcattgattaatttctttgattggaaactagaaaat 31131737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Original strand, 18094078 - 18094136
Alignment:
Q  133 ttaggatgttgcatttgatgttgggatcattgatcaactcctttgattggaaacttgaa 191  Q
    |||| ||||||| | ||||||||||||| ||||| || | |||||||||||||||||||    
T  18094078 ttagaatgttgcctatgatgttgggatctttgattaattgctttgattggaaacttgaa 18094136  T

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