View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15426_low_9 (Length: 540)
Name: NF15426_low_9
Description: NF15426
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15426_low_9 |
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| [»] scaffold1719 (1 HSPs) |
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| [»] scaffold0717 (2 HSPs) |
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| [»] scaffold1248 (1 HSPs) |
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| [»] scaffold0952 (1 HSPs) |
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Alignment Details
Target: scaffold1719 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: scaffold1719
Description:
Target: scaffold1719; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 17 - 528
Target Start/End: Complemental strand, 674 - 148
Alignment:
| Q |
17 |
aaaattaaatatattaacgatcgtattaacttttactcctaattttacttaatgtaacaacctcttacctccctcacaaatctgcaacgtgggaggactc |
116 |
Q |
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| T |
674 |
aaaattaaatatattaacgatcgtattaacttttactcctaattttacttaatgtaacaacctcttacctccctcacaaatctgcaacgtgggaggactc |
575 |
T |
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| Q |
117 |
cattcaatatgaggaagtgttgcattcacctattgatattaatctcacaaacttgtaacgtgggag--------------cacccaatgcatgttcaact |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
574 |
cattcaatatgaggaagtgttgcattcacctattgatattaatctcacaaacttgtaacgtgggaggactcaatgcatagcacccaatgcatgttcaact |
475 |
T |
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| Q |
203 |
tcagatcacatgaaaacttggcaaagatcacataaaaacttaa-tataatacctgaatacctaatgcattgcaccgcctgagtattaaatccgaatacga |
301 |
Q |
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| T |
474 |
tcagatcacataaaaacttggcaaagatcacataaaaacttaaatataatacctgaatacctaatgcattgcaccgcctgagtattaaatccgaatacga |
375 |
T |
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| Q |
302 |
tagatccttaagacacccatgatttcaaataaatttgaacattgaaggttactcatatttcaaacttctgacatattgctatgtttgagttgcgtgttct |
401 |
Q |
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| T |
374 |
tagatccttaagacacccatgatttcaaataaatttgaacattgaaggttactcatatttcaaacttctgacatattgctatgtttaagttgcgtgttct |
275 |
T |
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| Q |
402 |
aatttacttttacttaatgtaacaacctcaacctgatattaatgctcttaaagaagttttgcaacaagataggtaaatataagacacgcagtacaaaaca |
501 |
Q |
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| T |
274 |
aatttacttttacttaatgtaacaacctcaacctgatattaatgctcttaaagaagttttgcaacaagataggtaaatataagacacgcagtacaaaaca |
175 |
T |
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| Q |
502 |
tgtaagcgttcacgcagcattcatctc |
528 |
Q |
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| T |
174 |
tgtaagcgttcacgcagcattcatctc |
148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 163 - 386
Target Start/End: Complemental strand, 20600776 - 20600547
Alignment:
| Q |
163 |
acaaacttgtaacgtgggagcacccaatgcatgttcaacttca----------gatcacatgaaaacttggcaaagatcacataaaaacttaa-tataat |
251 |
Q |
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| T |
20600776 |
acaagcttgcaacgtgggaggacccaatgcatgttcaacttcaaaaaccaacagatcacataaaaacttgt-----atcacataaaaacttaaatataat |
20600682 |
T |
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| Q |
252 |
acctgaatacctaatgcattgcaccgcctgagtattaaatccgaatacgatagatccttaagacacccatgatttcaaataaatttgaacattgaaggtt |
351 |
Q |
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| T |
20600681 |
acctgaatacctaatgcattgtaccgcctgagtattaaatccgaatacgatagatccttaagacacccatgatttcaaataaatttgaacattcaaggtt |
20600582 |
T |
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| Q |
352 |
actcatatttcaaacttctgacatattgctatgtt |
386 |
Q |
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| T |
20600581 |
actcatatttcaaacttctgacatattgctatgtt |
20600547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 385 - 528
Target Start/End: Complemental strand, 20600490 - 20600346
Alignment:
| Q |
385 |
tttgagttgcgtgttctaattt-acttttacttaatgtaacaacctcaacctgatattaatgctcttaaagaagttttgcaacaagataggtaaatataa |
483 |
Q |
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|||| ||| ||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20600490 |
tttgcgttacgtgttctaatttgacttttactcaatgtaacaacctcagcctgatattaatgctcttaaagaagttttgcaacaagataggtaaatataa |
20600391 |
T |
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| Q |
484 |
gacacgcagtacaaaacatgtaagcgttcacgcagcattcatctc |
528 |
Q |
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| T |
20600390 |
gacacgcagtacaaaacatgtaagcgttcacgcagcattcatctc |
20600346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 389
Target Start/End: Complemental strand, 20579771 - 20579717
Alignment:
| Q |
336 |
ttgaacattgaaggttactcatatttcaaacttctgacata-ttgctatgtttga |
389 |
Q |
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| T |
20579771 |
ttgaacattgaaggttactcatatatcaaacttctgacagatttgctatgtttga |
20579717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0717 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: scaffold0717
Description:
Target: scaffold0717; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 619 - 528
Alignment:
| Q |
115 |
tccattcaatatgaggaagtgttgcattcacctattgatattaatctcacaaacttgtaacgtggg-agcacccaatgcatgttcaacttca |
205 |
Q |
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| T |
619 |
tccattcaatatgaggaagtgttgcattcacctattgatattaatctcacaaacttgtaacgtgggtggcacccaatgcatgttcaacttca |
528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0717; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 389
Target Start/End: Complemental strand, 4494 - 4440
Alignment:
| Q |
336 |
ttgaacattgaaggttactcatatttcaaacttctgacata-ttgctatgtttga |
389 |
Q |
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| T |
4494 |
ttgaacattgaaggttactcatatatcaaacttctgacagatttgctatgtttga |
4440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1248 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold1248
Description:
Target: scaffold1248; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 336 - 394
Target Start/End: Complemental strand, 2272 - 2213
Alignment:
| Q |
336 |
ttgaacattgaaggttactcatatttcaaacttctgacata-ttgctatgtttgagttgc |
394 |
Q |
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| T |
2272 |
ttgaacattgaaggttactcatatatcaaacttctgacagatttgctatgtttgagttgc |
2213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0952 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0952
Description:
Target: scaffold0952; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 336 - 394
Target Start/End: Original strand, 41 - 100
Alignment:
| Q |
336 |
ttgaacattgaaggttactcatatttcaaacttctgacata-ttgctatgtttgagttgc |
394 |
Q |
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| T |
41 |
ttgaacattgaaggttactcatatatcaaacttctgacagatttgctatgtttgagttgc |
100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 386
Target Start/End: Complemental strand, 54406397 - 54406309
Alignment:
| Q |
305 |
atccttaagacacccatgatttcaaa------taaatttgaacattgaaggttactcatatttcaaac-ttctgacatattgctatgtt |
386 |
Q |
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| T |
54406397 |
atccttaagacacccgtgatttcaaacaaaattaaagttgaacattgaaggttgctcatatttcaaactttctgacatattggtatgtt |
54406309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 428
Target Start/End: Complemental strand, 54406245 - 54406208
Alignment:
| Q |
391 |
ttgcgtgttctaatttacttttacttaatgtaacaacc |
428 |
Q |
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| T |
54406245 |
ttgcgtgttgtaatttactttaacttaatgtaacaacc |
54406208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 54406466 - 54406425
Alignment:
| Q |
83 |
acctccctcacaaatctgcaacgtgggaggactccattcaat |
124 |
Q |
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| T |
54406466 |
acctccctcacaaacttgcaacgtgggagaactccattcaat |
54406425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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