View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15427_high_2 (Length: 451)
Name: NF15427_high_2
Description: NF15427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15427_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 449
Target Start/End: Complemental strand, 13615024 - 13614594
Alignment:
| Q |
19 |
aaggatatcttctattattggcaaagcagttatcgatgggagttccggtaaatatttcagttgcttacagtgattcaagttcaaatttctaagtttggaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13615024 |
aaggatatcttctattattggcaaagcagttatcgatgggagttccggtaaatatttcagttgcttacagtgattcaagttcaattttctaagtttggaa |
13614925 |
T |
|
| Q |
119 |
agttcttctatactaggcggtagagtaacaaatctgttcccacccaaccataggaattctaagcagtgtaaccacccaatagcatcagggatttgaagaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13614924 |
agttcttctatactaggcggtagagtaacaaatctgttcccacccaaccttaggatttctaagcagtgtaaccacccaatagcatcagggatttgaagaa |
13614825 |
T |
|
| Q |
219 |
gattgcagaaacttatgtcaagaaattgcaaatatgaaaaatgagacaatgaaggcaacaataaaccaattgaatcttctcgctttcgaaaaattgaaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13614824 |
gattgcagaaacttatgtcaagaaattgcaaatatgaaaaatgagacaatgaaggcaacaataaaccaattgaatcttctcgctttcgaaaaattgaaaa |
13614725 |
T |
|
| Q |
319 |
tccaaagtgacgctttagaactttgtggatgcaggaagttgattggtattgggtagtactttctttgttatcatcaagcatcttcaaattttctacttgc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13614724 |
tccaaagtgacgctttagaactttgtggatgcaggaagttgattggtattgggtagtactttctttgttatcatcaagcatcttcaaattttctacttgc |
13614625 |
T |
|
| Q |
419 |
ctttgtctctttaacaacttattattaagta |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
13614624 |
ctttgtctctttaacaacttattattaagta |
13614594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 68 - 449
Target Start/End: Complemental strand, 31247205 - 31246827
Alignment:
| Q |
68 |
aaatatttcagttgcttacagtgattcaagttcaaatttctaagtttggaaagttcttctatactaggcggtagagtaacaaatctgttcccacccaacc |
167 |
Q |
| |
|
||||||||||| || ||||| || | ||||||||| | |||||||||||||||||| | || |||| |||||||||||||| |||| || |||| |
|
|
| T |
31247205 |
aaatatttcagctgtttacaatgctccaagttcaactgtctaagtttggaaagttccttgatgctagaaggtagagtaacaaaattgtttcctcccacat |
31247106 |
T |
|
| Q |
168 |
ataggaattctaagcagtgtaaccacccaatagcatcagggatttgaagaagattgcagaaacttatgtcaagaaattgcaaatatgaaaaatgagacaa |
267 |
Q |
| |
|
||| | ||||||||| |||| || ||||| |||| ||||||||||| ||||||||||||||||| ||||||| |||||| | |||| | | |||||| |
|
|
| T |
31247105 |
ttagaatttctaagcaatgtagccttccaattgcattagggatttgaaaaagattgcagaaacttaggtcaagatattgcagacatgacagacaagacaa |
31247006 |
T |
|
| Q |
268 |
tgaaggcaacaataaaccaattgaatcttctcgctttcgaaaaattgaaaatccaaagtgacgctttagaactttgtggatgcaggaagttgattggtat |
367 |
Q |
| |
|
||||||||||||||||||| |||||||| || |||||||||| |||||| |||||| ||||||||||||||| |||| |||| |||| ||||||| |
|
|
| T |
31247005 |
cgaaggcaacaataaaccaaccgaatcttcgcgttttcgaaaaaaagaaaatggaaagtgcggctttagaactttgtagatgaaggatgttggttggtat |
31246906 |
T |
|
| Q |
368 |
tgggtagtactttctttgttatcatcaagcatcttcaaattttctacttgcctttgtctctttaacaacttattattaagta |
449 |
Q |
| |
|
|| ||||||| |||| ||| ||||||||||| ||||| ||| |||||||||||||| ||||| |||||||||||||| |
|
|
| T |
31246905 |
tgagtagtacattct---ttaatatcaagcatctccaaatgttcattttgcctttgtctctctaacatcttattattaagta |
31246827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 74 - 241
Target Start/End: Complemental strand, 31212788 - 31212621
Alignment:
| Q |
74 |
ttcagttgcttacagtgattcaagttcaaatttctaagtttggaaagttcttctatactaggcggtagagtaacaaatctgttcccacccaaccatagga |
173 |
Q |
| |
|
||||| ||||||||||| | ||||||||| | ||||||||||||||||| || || |||| ||||| || ||||| ||||||| || ||| ||| | |
|
|
| T |
31212788 |
ttcagctgcttacagtgctccaagttcaattctctaagtttggaaagttatttcatgctagaaggtagtgtcacaaaattgttcccccctaactttagca |
31212689 |
T |
|
| Q |
174 |
attctaagcagtgtaaccacccaatagcatcagggatttgaagaagattgcagaaacttatgtcaaga |
241 |
Q |
| |
|
||||||||| || ||| ||||||| |||| ||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
31212688 |
tttctaagcaatgcaacaacccaattgcattagggacttgaagaagattgcagaaacttaggtcaaga |
31212621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 31304348 - 31304296
Alignment:
| Q |
27 |
cttctattattggcaaagcagttatcgatgggagttccggtaaatatttcagt |
79 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
31304348 |
cttctattattggaaaagcagttatcgatgggagttctggtaaatattacagt |
31304296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University