View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15427_low_1 (Length: 505)
Name: NF15427_low_1
Description: NF15427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15427_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 43 - 491
Target Start/End: Complemental strand, 37958640 - 37958190
Alignment:
| Q |
43 |
taactaattaaacacatattaagaaaagtggtcaaatatgattttattagagaaagaagcatttggcaagaaaattttacctcctccattgaacttgttg |
142 |
Q |
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| T |
37958640 |
taactaattaaacacatattaagaaaaatggtcaaatatgattttattagagaaaaaagcatttggcaagaaaattttacctcctccattgaacttgttg |
37958541 |
T |
|
| Q |
143 |
acaacattgtccaagtagtagagagcatattcatccttggtttgcatatgagcaaaagctgtggaagacggcgagaacaagaatgacccatcttgggact |
242 |
Q |
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| T |
37958540 |
acaacattgtccaagtagtagagagcatattcatccttggtttgcatatgagcaaaagctgtggaagacggcgagaacaagaatgacccatcttgggact |
37958441 |
T |
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| Q |
243 |
gcaacttcaaaatttgataccaattcaaattctgcattccctctaaactgtgtagcaatgttgtgggcaccatgtgcagcacatctcttggtatcctgat |
342 |
Q |
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| T |
37958440 |
gcaacttcaaaatttgataccaattcaaattctgcattccctctaaactgtgtagcaatgttgtgggcaccatgtgcagcacatctcttggtatcctgat |
37958341 |
T |
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| Q |
343 |
acatgttatatttactgattataataactgcgatgctaatagt--ttttacaaatgtctcgtgaaatttgaactatatccgttgaggctacatagtcaaa |
440 |
Q |
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| T |
37958340 |
acatgttatatttactggttataataactgcgatgctaatagttattttacaaatgtctcgtgaaatttgaactatatccgttgaggctacatagtcaaa |
37958241 |
T |
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| Q |
441 |
ctcttactacttactactgacatgtatattgtactgtgttataagaataat |
491 |
Q |
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| T |
37958240 |
ctcttactacttactactgacatgtatattgtactgtgttataagaataat |
37958190 |
T |
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