View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15427_low_2 (Length: 503)
Name: NF15427_low_2
Description: NF15427
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15427_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 485
Target Start/End: Complemental strand, 46288863 - 46288388
Alignment:
| Q |
12 |
agagacaaacaagtgaaaaatataactaacgagaaatgtttgatggagaatacccaatttgtannnnnnnncttctacatatcatatcgacactttattt |
111 |
Q |
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| T |
46288863 |
agagacaaactagtgaaaaatataactaacgagaaatgtttgatggagaatacccaatttgtattttttt-cttctacatatcatatcgacactttattt |
46288765 |
T |
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| Q |
112 |
tattagtgattttttcttgtttcctaaaggttgagaaagtagttttactcgaattatgtctgaggatagatgagaaaagtatactttcttattgtgaaaa |
211 |
Q |
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| T |
46288764 |
tattagtgattttttcttgtttcctaaaggttgagaaagtagttttactcgaattatgtttgacgatagatgagaaaagtatactttcttattgtgaaaa |
46288665 |
T |
|
| Q |
212 |
acaatattgtattttggatccaatacgcatctcacacttactaaatttgtacatggctataacaatacacttttagacaagg-nnnnnnnnttaaaccta |
310 |
Q |
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| T |
46288664 |
acaatattgtattttggatccaatacacatctcacatttactaaatttgtatatggctataacaatacacttttagacgaggaaaaaaaaattaaaccta |
46288565 |
T |
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| Q |
311 |
cttcatgtggtcactaatataaat---nnnnnnnncaactttgtaagtttattgaatagatgatgcatctaatctctatatattcactttgtgagacaat |
407 |
Q |
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| T |
46288564 |
cttcatgt-gtcactattataaataaataaataaaaaactcagtaggtttattgaatagatgatgcatctaa--tctatatattcactttgtgagacaat |
46288468 |
T |
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| Q |
408 |
aatcttaataaaacaatatattaaaatcaatggttaagatttggagtaa--ctttatgctctccaccactataaaacatc |
485 |
Q |
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| T |
46288467 |
aattttaataaaataatatattaaaatcaatggttaagatttagagtaattctttatgctctccaccattataaaacatc |
46288388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 458
Target Start/End: Complemental strand, 3077321 - 3077288
Alignment:
| Q |
425 |
atattaaaatcaatggttaagatttggagtaact |
458 |
Q |
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| T |
3077321 |
atattaaaatcaatggttatgatttggagtaact |
3077288 |
T |
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