View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15428_high_2 (Length: 721)
Name: NF15428_high_2
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15428_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 42742820 - 42743248
Alignment:
| Q |
1 |
gatgtgctcctaattgagggtatggactacaacatgacgaactaaagtttgaatcttgaatggaagagctgctcatatttaaaataggataatgcctcgt |
100 |
Q |
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| T |
42742820 |
gatgtgctcctaattgagggtatggactacaacatgacgaactaaagtttgaatcttgaatggaagagctgctcatatttaatatcggataacgcctcgt |
42742919 |
T |
|
| Q |
101 |
atatgattacttcaaggggaggggggagaacattgaatcatcaacatcattatcatttcactccaactgccaaatcatcttatccaactttatatctcat |
200 |
Q |
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| T |
42742920 |
atatgattacttcaaggggaggggggagaacattgaatcatcaacctcattatcattttactccaactgccaaatcatcttatccaactttatatctcat |
42743019 |
T |
|
| Q |
201 |
tttttgattaattagcaccagactatcatgaattttgagactaatttattcttttaacaatatcaatatcnnnnnnnnnnncttcctgaaaacctactag |
300 |
Q |
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| T |
42743020 |
tttttgattaattagcactagactatcatgaattttgagactaatttattcttttaacaataccaatatc----tttttttctccctgaaaacctactag |
42743115 |
T |
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| Q |
301 |
tagactagttatacactatatggacaaatcatattggagctggatagcaatatcttcaatatatatgcaattagccccacaagataagagaagataaagc |
400 |
Q |
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| T |
42743116 |
tagactagttatacactatatggacaaatcatattggagctggatagcaatatcttcaatctatatgcaattagccccacaagataagagaagataaagc |
42743215 |
T |
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| Q |
401 |
ttatcatgtcccatgatcatgactggtctatgg |
433 |
Q |
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| T |
42743216 |
ttatcatgtcccatgatcatgactggtctatgg |
42743248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 474 - 704
Target Start/End: Original strand, 42743288 - 42743518
Alignment:
| Q |
474 |
ggaaagggatgtccctccaccatcacctgtttgcttccagtttgaggaaagaacaccacttcacttgcacagtgtactggattggaccagagtaattata |
573 |
Q |
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| T |
42743288 |
ggaaagggatgtccctccaccatcacctgtttgcttccagtttgaggaaagaacaccacttcacttgcacagtgtactggattggacccgagtaattata |
42743387 |
T |
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| Q |
574 |
tgtgttagtctttttctggctaagataaataaattatgtttggatggtattgtggcagggcatggtgggccttatgatagaggcagcacagccattactc |
673 |
Q |
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| T |
42743388 |
tgtgttagtctttttctggctaagataaataaattatgtttggatggtattgtggcagggcatggtgggccttatgatagaggcagcacagccattactc |
42743487 |
T |
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| Q |
674 |
ttaaaatgggaacaaattatagaggaccaag |
704 |
Q |
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| T |
42743488 |
ttaaaatgggaacaaattatagaggaccaag |
42743518 |
T |
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