View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15428_high_31 (Length: 230)
Name: NF15428_high_31
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15428_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 7905038 - 7905239
Alignment:
| Q |
1 |
gaggaatgagcaacctccaagccaagaaagaacttgagctggccaaggtctttgatacgaaaatgatgatcaagcaattgcttaatctcagcaaaagcag |
100 |
Q |
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| T |
7905038 |
gaggaatgagcaacctccaagccaagaaagaacttgagctagcctaggtctttgatacgaaaatgatgatcaagcaattgcttaatctcagcaaaagcag |
7905137 |
T |
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| Q |
101 |
caaggcagtcaccagccaatataatgtcattcacgtatattaataaagctgtgaaagaagttggagaagcacgaattaaaaaggagtgatcagctgaagc |
200 |
Q |
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| T |
7905138 |
caaggcagtcaccagccaatataatgtcattcacgtatattaataaagctgtgaaagaagttggagaagcacgaattaaaaaggagtgatcagctgaagc |
7905237 |
T |
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| Q |
201 |
tt |
202 |
Q |
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|| |
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| T |
7905238 |
tt |
7905239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 7905276 - 7905243
Alignment:
| Q |
197 |
aagcttatttcactcctcctgaccattggttttg |
230 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
7905276 |
aagcttatttcactcctcctgaccattggttttg |
7905243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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