View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15428_high_4 (Length: 668)
Name: NF15428_high_4
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15428_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 17 - 576
Target Start/End: Original strand, 26031041 - 26031585
Alignment:
| Q |
17 |
catcagcctccaccaaattctcagcagatatcaaaggaatctcatcatctttctcaggtgctttcattagttccaacacttcctttggcagtgtctctac |
116 |
Q |
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| T |
26031041 |
catcagcctccgccaaattctcagcagatatcaaaggaacctcatcatctttctcaggtgctttcattagttccaacacttcctttggcagtgtctctac |
26031140 |
T |
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| Q |
117 |
gacacggtacaaaaacccttcaacaccatcaacagaatcaaccccttttttcaatgatcttgctaatgattccacatgaccatacattgagtaaaaaaca |
216 |
Q |
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| T |
26031141 |
gacacggtacaaaaacccttcaacaccatcaacagaatcaaccccttttttcaatgatcttgctaatgattccacatgaccatacattgagtaaaaaaca |
26031240 |
T |
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| Q |
217 |
atgtaaactttcaattttttcactgcttctgatgttgttgctacatctattgttgctacatctacgcttctacttgttgtttcagtttctggaatttggc |
316 |
Q |
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| T |
26031241 |
atgtaaactttcagctttttcactgcttctgatgttgt---------------tgctacatctatgcttctacttgttgtttcagtttctggaatttggc |
26031325 |
T |
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| Q |
317 |
tttcaacactaagaggctcattctcttctgtagttggtgcttttttcttgcttggtatgcaacctcttcctttccccattgaaattttgaaatatcaatt |
416 |
Q |
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| T |
26031326 |
tttcaacactaagaggttcattctcttctgtagttggtgcttttttcttgcttggtatgcaacctcttcctttccccattgaaattttgaaatatcaatt |
26031425 |
T |
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| Q |
417 |
ggtcaaatgtattttggtaagatagtttctaaataatgtacaaataaagcaatgattagtttcttctttgtctttcttgctaaacaagatattatgatag |
516 |
Q |
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| T |
26031426 |
ggtcaaatgtattttggtaagatagtttctaaataatgtacaaataaagcaatgattagtttcttctttgtctttcttgctaaacaagatattatgatag |
26031525 |
T |
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| Q |
517 |
aaattgattagtgaaggttaatttggattatgtgattaaattttgtgtaatggtaatgac |
576 |
Q |
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| T |
26031526 |
aaattgattagtgaaggttaatttggattatgtgattaaattttgtgtaatggtaatgac |
26031585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 601 - 655
Target Start/End: Original strand, 26031604 - 26031658
Alignment:
| Q |
601 |
acagataggtgggtgggtggaaaacaatgcaacgtgaaggtgcttggattagact |
655 |
Q |
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| T |
26031604 |
acagataggtgggtgggtggaaaacaatgcaacgtgaaggtgcttggattagact |
26031658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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