View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15428_high_6 (Length: 558)

Name: NF15428_high_6
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15428_high_6
NF15428_high_6
[»] chr2 (14 HSPs)
chr2 (226-543)||(2294375-2294688)
chr2 (1-179)||(2310481-2310659)
chr2 (1-179)||(2294150-2294328)
chr2 (1-176)||(2351339-2351514)
chr2 (17-179)||(2303779-2303941)
chr2 (1-179)||(2327318-2327496)
chr2 (1-179)||(2321465-2321643)
chr2 (1-178)||(2331033-2331210)
chr2 (226-488)||(2321687-2321932)
chr2 (226-289)||(2303983-2304046)
chr2 (473-511)||(2321971-2322009)
chr2 (226-339)||(2327575-2327685)
chr2 (512-543)||(2322076-2322107)
chr2 (256-339)||(2331305-2331388)
[»] chr8 (2 HSPs)
chr8 (1-172)||(41127345-41127519)
chr8 (97-172)||(26507056-26507131)


Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 226 - 543
Target Start/End: Original strand, 2294375 - 2294688
Alignment:
Q  226 aaccaccctagattctctgcctgagaatgtcataacacagcaggggagtattatatgtggatttgtcatatggtgggattttgtttcatataatgatccc 325  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2294375 aaccaccctagattctctgcttgagaatgtcataacacagcaggggagtattatatgtggatttgtcatatggtgggattttgtttcatataatgatccg 2294474  T
Q  326 ttatgcatacatatatatgccttcacatatgttattgttctttcttatatatcttgtttcctgtataaataaaaactttgcctgtcattcttgtaagtca 425  Q
    |||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2294475 ttatgcata----tatatgccttcacatatgttattgttctttcttatatatcttgtttcctgtataaataaaaactttgcctgtcattcttgtaagtca 2294570  T
Q  426 agatactttcattgtaaaaatatatgatctttgttgtagtaatattgaagttggtttattttgttaatctgtttggtcttggcggttatagattatgttt 525  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2294571 agatactttcattgtaaaaatatatgatctttgttgtagtaatattgaagttggtttattttgttaatctgtttggtcttggcggttatagattatgttt 2294670  T
Q  526 cctccctaaacatctgtg 543  Q
    ||||||||||||||||||    
T  2294671 cctccctaaacatctgtg 2294688  T

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Target: chr2; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 2310481 - 2310659
Alignment:
Q  1 gaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggcgggcatgt 100  Q
    |||||||||| |||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2310481 gaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggcgggcatgt 2310580  T
Q  101 tgatttgacggaaatacaagaattcactatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagatt 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2310581 tgatttgacggaaatacaagaattcactatggtgatgaaaaatccagtgcaagttcatatttctcctaggatatagatt 2310659  T

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Target: chr2; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 2294150 - 2294328
Alignment:
Q  1 gaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggcgggcatgt 100  Q
    |||||||||| |||  |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2294150 gaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaatttcgattggaaggttccagagggcgggcatgt 2294249  T
Q  101 tgatttgacggaaatacaagaattcactatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagatt 179  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2294250 tgatttgacggaaatacaagaattcaccatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagatt 2294328  T

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Target: chr2; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 2351339 - 2351514
Alignment:
Q  1 gaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggcgggcatgt 100  Q
    |||| ||||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  2351339 gaatctgtcccggatataatttagctttgcttcacttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagaaggtgggcatgt 2351438  T
Q  101 tgatttgacggaaatacaagaattcactatggtgatgaaaaatccattgcaagttcatatttctcctaggatatag 176  Q
    ||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  2351439 tgatttgtcggaaaaacaagaattcactgtggtgatgaaaaatccattgcaagttcgtatttctcctaggatatag 2351514  T

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Target: chr2; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 2303779 - 2303941
Alignment:
Q  17 taatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggcgggcatgttgatttgacggaaata 116  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||| |||||| |    
T  2303779 taatttagctttgctccatttagaatattttgtggctaatttggtttggaatttcgattggaagcttccagagggcggctatgttgatttgtcggaaaaa 2303878  T
Q  117 caagaattcactatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagatt 179  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2303879 caagaattcaatatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagatt 2303941  T

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Target: chr2; HSP #6
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 2327318 - 2327496
Alignment:
Q  1 gaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggcgggcatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||    
T  2327318 gaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccggagggtggccatgt 2327417  T
Q  101 tgatttgacggaaatacaagaattcactatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagatt 179  Q
     |||||| | |||| |   ||||||||  |||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  2327418 cgatttgtcagaaaaatttgaattcaccgtggtgatgaaaaatccattgcaagttcatatttctcatagaatatagatt 2327496  T

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Target: chr2; HSP #7
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 2321465 - 2321643
Alignment:
Q  1 gaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggcgggcatgt 100  Q
    |||||||||| |||  |||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| || |||| ||||| || |||||    
T  2321465 gaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggtttggaatttcaattggcagcttccggagggtggccatgt 2321564  T
Q  101 tgatttgacggaaatacaagaattcactatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagatt 179  Q
    ||||||| |||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2321565 tgatttgtcggaaaaagatgaattcactatggtgatgaaaaatccattgcaagttcatatttctcctagggtatagatt 2321643  T

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Target: chr2; HSP #8
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 2331033 - 2331210
Alignment:
Q  1 gaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagagggcgggcatgt 100  Q
    |||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |  ||    
T  2331033 gaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttggtttggaatttcgattggaaggttcccgagggtggtcgcgt 2331132  T
Q  101 tgatttgacggaaatacaagaattcactatggtgatgaaaaatccattgcaagttcatatttctcctaggatatagat 178  Q
    ||||||| | || | ||| |||||||||||||| ||||||||||||||||| | |||||||||||| ||||| |||||    
T  2331133 tgatttgtcagagaaacaggaattcactatggtcatgaaaaatccattgcaggctcatatttctccaaggatctagat 2331210  T

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Target: chr2; HSP #9
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 226 - 488
Target Start/End: Original strand, 2321687 - 2321932
Alignment:
Q  226 aaccaccctagattctctgcctgagaatgtcataacacagcaggggagtattatatgtggatttgtcatatggtgggattttgtttcatataatgatccc 325  Q
    |||||| ||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  2321687 aaccactctagattctctgcttgagaatgtcataacacaacaggggaatattatatgtggatttctcatatggtcggattttgtttcatacaatgatccc 2321786  T
Q  326 ttatgcatacatatatatgccttcacatatgttattgttctttcttatatatcttgtttcctgtataaataaaaactttgcctgtcattcttgtaagtca 425  Q
    ||||||||||||  ||||||||| ||               ||||||||||||||||||| ||||||||  |||||  || |||||||||||||||||||    
T  2321787 ttatgcatacattcatatgcctt-ac---------------ttcttatatatcttgtttcttgtataaaataaaac-atgtctgtcattcttgtaagtca 2321869  T
Q  426 agatactttcattgta-aaaatatatgatctttgttgtagtaatattgaagttggtttattttg 488  Q
    ||||||||||| |||| |||| |||||||| ||||| | |||||||  |||||| |||||||||    
T  2321870 agatactttcaatgtataaaaaatatgatc-ttgtttttgtaatatcaaagttgttttattttg 2321932  T

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Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 2303983 - 2304046
Alignment:
Q  226 aaccaccctagattctctgcctgagaatgtcataacacagcaggggagtattatatgtggattt 289  Q
    |||||| ||||||||||||| |||||||||||||||||||||  | | ||||||||||||||||    
T  2303983 aaccactctagattctctgcttgagaatgtcataacacagcaaagaaatattatatgtggattt 2304046  T

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Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 473 - 511
Target Start/End: Original strand, 2321971 - 2322009
Alignment:
Q  473 aagttggtttattttgttaatctgtttggtcttggcggt 511  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  2321971 aagttggtttattttgttaatctgtttggtcttgacggt 2322009  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 339
Target Start/End: Original strand, 2327575 - 2327685
Alignment:
Q  226 aaccaccctagattctctgcctgagaatgtcataacacagcaggggagtattatatgtggatttgtcatat-ggtgggattttgtttcatataatgatcc 324  Q
    ||||| |||||||||||| | ||  ||||||||||||||||   ||| |||||||||| ||||||||| || |||  ||||||| |||||| || |||||    
T  2327575 aaccatcctagattctct-cttggcaatgtcataacacagc---ggaatattatatgtagatttgtcacattggtaagattttgcttcatacaacgatcc 2327670  T
Q  325 cttatgcatacatat 339  Q
     ||||||||||||||    
T  2327671 attatgcatacatat 2327685  T

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Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 512 - 543
Target Start/End: Original strand, 2322076 - 2322107
Alignment:
Q  512 tatagattatgtttcctccctaaacatctgtg 543  Q
    ||||||||||||||||||||||||||||||||    
T  2322076 tatagattatgtttcctccctaaacatctgtg 2322107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 339
Target Start/End: Original strand, 2331305 - 2331388
Alignment:
Q  256 cataacacagcaggggagtattatatgtggatttgtcatatggtgggattttgtttcatataatgatcccttatgcatacatat 339  Q
    |||| ||||||||||||  |||||  |  ||||||||  |||||| |||||||||||||  ||||||| |||||||||||||||    
T  2331305 catatcacagcaggggaagattatccgcagatttgtccgatggtgtgattttgtttcatcaaatgatcacttatgcatacatat 2331388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 41127345 - 41127519
Alignment:
Q  1 gaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggtttggaatttcgattggaaggttccagaggg---cgggca 97  Q
    |||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||  |||||||| ||| ||||||    ||  |    
T  41127345 gaatttgtcctggatataatttagctttgctccatttggaatactttgtggctaatttggtctggaattttaattggaagattctagagggagctggtta 41127444  T
Q  98 tgttgatttgacggaaatacaagaattcactatggtgatgaaaaatccattgcaagttcatatttctcctaggat 172  Q
    |||||||||| |||||| |   ||||||||  |||| |||||||||||| |||||||||||||||||||||||||    
T  41127445 tgttgatttgtcggaaaaaactgaattcaccgtggttatgaaaaatccactgcaagttcatatttctcctaggat 41127519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 26507056 - 26507131
Alignment:
Q  97 atgttgatttgacggaaatacaagaattcactatggtgatgaaaaatccattgcaagttcatatttctcctaggat 172  Q
    ||||||||||| | |||| ||| ||||| ||||||||||||||| |||||||| ||| ||| || |||||||||||    
T  26507056 atgttgatttgtcagaaaaacaggaatttactatggtgatgaaatatccattggaagctcaaatatctcctaggat 26507131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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