View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15428_high_8 (Length: 556)
Name: NF15428_high_8
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15428_high_8 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 168 - 556
Target Start/End: Complemental strand, 10932981 - 10932593
Alignment:
| Q |
168 |
attgaaaaaattacttaccgccatagggattccaagaattgcgaagaagagcatggccccgaccttgataccatcagaaggatgtccgatggttgcacca |
267 |
Q |
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| T |
10932981 |
attgaaaaaattacttaccgccatagggattccaagaattgcgaagaagagcatggccccgaccttgataccatcagaaggatgtccgatggttgcacca |
10932882 |
T |
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| Q |
268 |
ccggacgtatgacgctcatgctcagctatcttggtaatgaggacagtcattgccaaacaaatagccaaaataaaattaactattccccaaagcctcttaa |
367 |
Q |
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| T |
10932881 |
ccggatgtctgacgctcatgctcagctatcttggtaatgaggacagtcattgccaaacaaatagccaaaataaaattaactattccccaaagcctcttaa |
10932782 |
T |
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| Q |
368 |
ttcctccaaccaatttccccaatggctccacagccaaagacattaaaccaagaacaacagcattaagcataagtcccaaagaaccaactctcacaccagt |
467 |
Q |
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| T |
10932781 |
ttcctccaaccaatttccccaatggctccacagccaaagacattaaaccaagaacaacagcattaagcataagtcccaaagaaccaactctcacaccagt |
10932682 |
T |
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| Q |
468 |
atcatatgctttctctcctgaaactcctccgtacacctcgcggcccatccagtcagtgtcgaacaagaagaacgggaaccacgcgatcc |
556 |
Q |
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| T |
10932681 |
atcatatgctttctctcctgaaactcctccgtacacctcacggcccatccagtcagtgtcgaacaagaagaacgggaaccacgcgatcc |
10932593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 10933214 - 10933050
Alignment:
| Q |
11 |
gaaagtaatctgtacaaatatacacaccaaatagttcata-------ttagtataaaataaaatatcctaaacccattaaataataatattcatcgaatg |
103 |
Q |
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| T |
10933214 |
gaaagtaatctgtacaaatatacacaccaaatagttcatacttcatattagtataaaataaaatatactaaacctattaaataataatattcgccaagtg |
10933115 |
T |
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| Q |
104 |
gaccc-cgtgctataaagcacagtttagcagttatagagaccgttagatttaaagaaaaattatt |
167 |
Q |
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| T |
10933114 |
gaccctggtgctataaagcacggtccagcagttgtgaagaccgttagatttgaagagaaattatt |
10933050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 548
Target Start/End: Original strand, 15124854 - 15124891
Alignment:
| Q |
511 |
cccatccagtcagtgtcgaacaagaagaacgggaacca |
548 |
Q |
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| T |
15124854 |
cccatccaatcagtgtcgaacaagaagaacggaaacca |
15124891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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