View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15428_low_1 (Length: 738)
Name: NF15428_low_1
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15428_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 30 - 436
Target Start/End: Complemental strand, 39319554 - 39319148
Alignment:
| Q |
30 |
gtacaaaattaaaatataggatgaagctgtgccctctcgttttgttaggttttgggtttagggaaggccattgaagaacaataaataccgcaaggctagg |
129 |
Q |
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| T |
39319554 |
gtacaaaattaaaatataggatgaagctgtgccctctcgttttgttaggttttgggtttagggaaggccattgaagaacaataaataccgcaaggctagg |
39319455 |
T |
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| Q |
130 |
cagccaatttgtaaattgtaattaatactatggctacgctatgtaatccaaaattgcttcaatgcggttgttttaattgttcacgagccacaagatatat |
229 |
Q |
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| T |
39319454 |
cagccaatttgtaaattgtaattaatactatggctacgctatgtaatccaaaattgcttcaatgcggttgttttaattgttcacgagccacaagatatat |
39319355 |
T |
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| Q |
230 |
ctaatgattagattcattaaaacaattggtacaactttctcccttactacttgtttcttgtttgtcaccagaccaagtgacaacgtcacataaaattcag |
329 |
Q |
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| T |
39319354 |
cgaatgattagattcgttaaaacaattggtacaactttctcctttactacttgtttcttgtttgtcacccgacgaagtgacaacgtcacataaaattcag |
39319255 |
T |
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| Q |
330 |
tctaaaattcaaactcaagtgaaggaaaaaatctacatagttttggacttttggaagtgtacttttaaattacataatttgtttgaaagttgatatggac |
429 |
Q |
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| T |
39319254 |
tctaaaattcaaactcaagtgaaggaaaaaatctacatagttttggacttttggaagtgtacttttaaattacataatttgtttgaaagttgatatggac |
39319155 |
T |
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| Q |
430 |
tcatcag |
436 |
Q |
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| T |
39319154 |
tcatcag |
39319148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 436 - 731
Target Start/End: Complemental strand, 39319112 - 39318818
Alignment:
| Q |
436 |
gcagtagaggtacctgcaaacattttgacactcaagtcagttagagagtaaatgattgagaggttttaggatagagtttgtgcatcatacatatgtgagg |
535 |
Q |
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| T |
39319112 |
gcagtagaggtacctgcaaacactttgacactcaagtcagttagagagtaaatgaa-gagaggttttaggatagagtttgtgcatcttacatatgcgagg |
39319014 |
T |
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| Q |
536 |
aaggcttgattttcgagttgttagttgtttgaatgggaaccttacgaagcggtgtgccatcaatgtctatctttgtctattatgtgtcgttaggaagttt |
635 |
Q |
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| T |
39319013 |
aaggcttgattttcgagttgttagttgtttgaatgggaaccttacgaagcggtgtgccatcaatgtctatctttgtctattatgtgtcgttaggacgttt |
39318914 |
T |
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| Q |
636 |
gagagtgaatggtccttggttagtcgttggaggcatttgggaagcaggatggatccaaggttgttgacttggttcgatgattgagtttggcctatg |
731 |
Q |
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| T |
39318913 |
gagagtgaacggtccttggttagtcgttggaggcatttgggaagcaggatggatccaaggttgttgacttggttcgatgattgagtttggcctatg |
39318818 |
T |
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