View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15428_low_11 (Length: 543)
Name: NF15428_low_11
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15428_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 252 - 527
Target Start/End: Original strand, 9166226 - 9166513
Alignment:
| Q |
252 |
aggtcccctccccttggaccttcatcgtcatcatagccacnnnnnnnattcagtccatgtctgttcttcttatctacttcctcatcttcatcttcctctc |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9166226 |
aggtcccctccccttggaccttcatcgtcatcatagccactttttttattcagtccatgtctattcttcttatctacttcctcatcttcatcttcctctc |
9166325 |
T |
|
| Q |
352 |
ctttatcagaggaagga------------tcatcaccagnnnnnnnacggcttctcccaccacctgcgttgctttctttgtcatctaacttccaatgttc |
439 |
Q |
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||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9166326 |
ctttatcagaggaaggaccttcatcatcatcatcaccagtttttttacggcttctcccaccacctgcgttgctttctttgtcatctaacttccaatgttc |
9166425 |
T |
|
| Q |
440 |
accaaatgcagcaggaccattatttgctgctttcatcatccatctttgatatccatcagcagtctttttcctattattcatcttctct |
527 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9166426 |
accaaatgcagcaggaccattatttgctgctttcatcatccatctttgatatccatcagcagtctttttcctattattcatcttctct |
9166513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 22 - 228
Target Start/End: Original strand, 9165990 - 9166196
Alignment:
| Q |
22 |
gcgagcttatcggtctttcacttttaacagatttttgtgttagacaacttttaaacaatgtgttctcagattgtcctattagcagttttataatgtatat |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
9165990 |
gcgagcttatcggtctttcacttttaacagatttttgtgttagataacttttaaacaatatgttctcagattgtcctattagcagttttatgatgtatat |
9166089 |
T |
|
| Q |
122 |
ggtnnnnnnnttgttccctgcatgaaactaaccaaaagtaaattggtaaccttcaacatggattcataaatataaaacaaacaaggcaagatactcaccc |
221 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9166090 |
ggtaaaaaaattgttccctgcatgaaactaaccaaaagtaaattggtaaccttcaacatggattcataaatataaaacaaacaaggcaagatactcaccc |
9166189 |
T |
|
| Q |
222 |
ttttcaa |
228 |
Q |
| |
|
||||||| |
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|
| T |
9166190 |
ttttcaa |
9166196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 310 - 527
Target Start/End: Original strand, 9154867 - 9155096
Alignment:
| Q |
310 |
gtctgttcttcttatctacttcctcatcttcatcttcctctcctttatcagaggaagga------------tcatcaccagnnnnnnnacggcttctccc |
397 |
Q |
| |
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|||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||| |
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| T |
9154867 |
gtcttttcttcctatctacttcctcgtcttcatcttcctctcctttatcagaggaaggaccttcatcttcatcatcaccagtctttttacggcctctccc |
9154966 |
T |
|
| Q |
398 |
accacctgcgttgctttctttgtcatctaacttccaatgttcaccaaatgcagcaggaccattatttgctgctttcatcatccatctttgatatccatca |
497 |
Q |
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||| ||||||||||| || |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
9154967 |
accccctgcgttgctctccttgtcatctaacttcccatgttcaccaaatgcagcaggcccattgtttgctgctttcatcatccatctttgatatccatca |
9155066 |
T |
|
| Q |
498 |
gcagtctttttcctattattcatcttctct |
527 |
Q |
| |
|
||||| ||||||||||| |||||||||||| |
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|
| T |
9155067 |
gcagtttttttcctatttttcatcttctct |
9155096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 132 - 228
Target Start/End: Original strand, 9154691 - 9154791
Alignment:
| Q |
132 |
ttgttccctgcatgaaactaaccaaaagtaaattggtaaccttcaacatggattcat----aaatataaaacaaacaaggcaagatactcacccttttca |
227 |
Q |
| |
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|||||| || ||| |||||||| | ||||||| || ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
9154691 |
ttgttcactacataaaactaactagaagtaaactgataaccttcaacatggattcatgaaaaaatataaaacaaacaaggcaaaatactcacccttttca |
9154790 |
T |
|
| Q |
228 |
a |
228 |
Q |
| |
|
| |
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|
| T |
9154791 |
a |
9154791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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