View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15428_low_12 (Length: 522)

Name: NF15428_low_12
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15428_low_12
NF15428_low_12
[»] chr1 (4 HSPs)
chr1 (219-511)||(5651190-5651482)
chr1 (219-457)||(22965570-22965810)
chr1 (20-165)||(5651536-5651681)
chr1 (20-165)||(22965864-22966009)
[»] chr2 (2 HSPs)
chr2 (219-457)||(38954113-38954353)
chr2 (20-165)||(38953914-38954059)
[»] chr3 (2 HSPs)
chr3 (235-384)||(21422565-21422714)
chr3 (20-158)||(21422379-21422516)
[»] chr5 (2 HSPs)
chr5 (235-384)||(30633837-30633986)
chr5 (20-158)||(30633651-30633788)


Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 219 - 511
Target Start/End: Complemental strand, 5651482 - 5651190
Alignment:
Q  219 catcttcagactgcatttcttacacgctcggcaatattttcaagcagatgtaggtcatctttcaaagaacccgttgaattctttaatctcaaataaacaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5651482 catcttcagactgcatttcttacacgctcggcaatattttcaagcagatgtaggtcatctttcaaagaacccgttgaattctttaatctcaaataaacaa 5651383  T
Q  319 ttggcgactctggatgacttgcaattgtgaagcctggtattttcgacaaccctgcagtagccaatgtatcagaatcaaagttcttaaattataaaatcct 418  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5651382 ttggcgactctggatgacttgcaattgtgaagcctagtattttcgacaaccctgcagtagccaatgcatcagaatcaaagttcttaaattataaaatcct 5651283  T
Q  419 tgttttatactggcaaaggcataaataaacatcaattcaaactgttgtgtgcaagccaaattgtggacactactgcgatacagttccattcat 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5651282 tgttttatactggcaaaggcataaataaacatcaattcaaactgttgtgtgcaagccaaattgtggacactgctgcgatacagttccattcat 5651190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 219 - 457
Target Start/End: Complemental strand, 22965810 - 22965570
Alignment:
Q  219 catcttcagactgcatttcttacacgctcggcaatattttcaagcagatgtaggtcatctttcaaagaacccgttgaattctttaatctcaaataaacaa 318  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| |||||||| ||||  ||||||||||||    
T  22965810 catcttcagactgcatttcttacatgctcggcaatattttcaagcagctgtaggttatctttcaaagaacccattgaattccttaaaatcaaataaacaa 22965711  T
Q  319 ttggcgactctggatgacttgcaattgtgaagcctggtattttcgacaaccctgcagtagccaatgtatcagaatcaaagttcttaaattataaaatcct 418  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||      
T  22965710 ttggcgactctggatgacttgcagttgtgaagcctggtatttttgacagccctgcagtagccaatgtatcagaatcaaagttcttaaattataaaatcaa 22965611  T
Q  419 tgttttata--ctggcaaaggcataaataaacatcaattca 457  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  22965610 tgttttatacgctggcaaaggcataaataaacatcaattca 22965570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 5651681 - 5651536
Alignment:
Q  20 ttgtgaagatcagactctgaatgccctgcagaaacaaataatctaattcctgcaggtaatcaacacttgtccaatgtcgatcttctggaagccaccacaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5651681 ttgtgaagatcagactctgaatgccctgcagaaacaaataatctaattccaacaggtaatcgacacttgtccaatgtcgatcttctggaagccaccacaa 5651582  T
Q  120 atacagaatcttctttcaaaacctgtgcaatacagaacattaagta 165  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  5651581 atacagaatcttctttcaaaacctgtggaatacagaacattaagta 5651536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 22966009 - 22965864
Alignment:
Q  20 ttgtgaagatcagactctgaatgccctgcagaaacaaataatctaattcctgcaggtaatcaacacttgtccaatgtcgatcttctggaagccaccacaa 119  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||||||    
T  22966009 ttgtgaagatcggactctgaatgcgctgcagaaacaaataatctaattcatagaggtaatcgacacttgtccaatgtcgatcttctggaagccaccacaa 22965910  T
Q  120 atacagaatcttctttcaaaacctgtgcaatacagaacattaagta 165  Q
    |||||||||||||||||||||||| || ||| ||||||||||||||    
T  22965909 atacagaatcttctttcaaaacctttggaatgcagaacattaagta 22965864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 219 - 457
Target Start/End: Original strand, 38954113 - 38954353
Alignment:
Q  219 catcttcagactgcatttcttacacgctcggcaatattttcaagcagatgtaggtcatctttcaaagaacccgttgaattctttaatctcaaataaacaa 318  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||| |||||||| ||||  ||||||||||||    
T  38954113 catcttcagactgcatttcttacatgctcggcaatattttcaagcagctgtaggttatctttcaaagaacccattgaattccttaaaatcaaataaacaa 38954212  T
Q  319 ttggcgactctggatgacttgcaattgtgaagcctggtattttcgacaaccctgcagtagccaatgtatcagaatcaaagttcttaaattataaaatcct 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||      
T  38954213 ttggcgactctggatgacttgcaattgtgaagcctggtattttcgacacccctgcagtagccaatgtatcagaatcaaagttcttaaattataaaatcaa 38954312  T
Q  419 tgttttata--ctggcaaaggcataaataaacatcaattca 457  Q
    |||||||||  ||||||||||||||||||||||||||||||    
T  38954313 tgttttatacgctggcaaaggcataaataaacatcaattca 38954353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 38953914 - 38954059
Alignment:
Q  20 ttgtgaagatcagactctgaatgccctgcagaaacaaataatctaattcctgcaggtaatcaacacttgtccaatgtcgatcttctggaagccaccacaa 119  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||||||||    
T  38953914 ttgtgaagatcggactctgaatgcgctgcagaaacaaataatctaattcatagaggtaatcgacacttgtccaatgtcgatcttctggaagccaccacaa 38954013  T
Q  120 atacagaatcttctttcaaaacctgtgcaatacagaacattaagta 165  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||    
T  38954014 atacagaatcttctttcaaaacctgtggaatgcagaacattaagta 38954059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 235 - 384
Target Start/End: Original strand, 21422565 - 21422714
Alignment:
Q  235 ttcttacacgctcggcaatattttcaagcagatgtaggtcatctttcaaagaacccgttgaattctttaatctcaaataaacaattggcgactctggatg 334  Q
    |||||||||| ||||||||||||||||||||  |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  21422565 ttcttacacgttcggcaatattttcaagcaggcgtaggtcatcattcaaagaacccgttgacttctttaatctcaaataaacaattggtgactctggatg 21422664  T
Q  335 acttgcaattgtgaagcctggtattttcgacaaccctgcagtagccaatg 384  Q
    ||| ||||| |||||||||||||||| | |||||||||||||||||||||    
T  21422665 actcgcaatcgtgaagcctggtatttccaacaaccctgcagtagccaatg 21422714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 21422379 - 21422516
Alignment:
Q  20 ttgtgaagatcagactctgaatgccctgcagaaacaaataatctaattcctgcaggtaatcaacacttgtccaatgtcgatcttctggaagccaccacaa 119  Q
    ||||||| ||| |||||||||||||||||||||||||| ||||| |||||| ||||||| |  |||||||| ||||| |||||||  |||| | ||||||    
T  21422379 ttgtgaacatcggactctgaatgccctgcagaaacaaacaatcttattcctacaggtaaacggcacttgtctaatgttgatcttcgagaagtcgccacaa 21422478  T
Q  120 atacagaatcttctttcaaaacctgtgcaatacagaaca 158  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  21422479 atacagaatcttctttcaaaacctgtg-aatacagaaca 21422516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 235 - 384
Target Start/End: Original strand, 30633837 - 30633986
Alignment:
Q  235 ttcttacacgctcggcaatattttcaagcagatgtaggtcatctttcaaagaacccgttgaattctttaatctcaaataaacaattggcgactctggatg 334  Q
    |||||||||| ||||||||||||||||||||  |||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||    
T  30633837 ttcttacacgttcggcaatattttcaagcaggcgtaggtcatcattcaaagaacccgttgacttctttattctcaaataaacaattggtgactctggatg 30633936  T
Q  335 acttgcaattgtgaagcctggtattttcgacaaccctgcagtagccaatg 384  Q
    |||  |||| |||||||||||||||| | |||||||||||||||||||||    
T  30633937 actcacaatcgtgaagcctggtatttccaacaaccctgcagtagccaatg 30633986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 30633651 - 30633788
Alignment:
Q  20 ttgtgaagatcagactctgaatgccctgcagaaacaaataatctaattcctgcaggtaatcaacacttgtccaatgtcgatcttctggaagccaccacaa 119  Q
    ||||||| ||| |||||||||||||||||||||||||| ||||| |||||| |||| || |  |||||||| ||||| |||||||  |||| | ||||||    
T  30633651 ttgtgaacatcggactctgaatgccctgcagaaacaaacaatcttattcctacaggcaaacggcacttgtctaatgttgatcttcgagaagtcgccacaa 30633750  T
Q  120 atacagaatcttctttcaaaacctgtgcaatacagaaca 158  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  30633751 atacagaatcttctttcaaaacctgtg-aatacagaaca 30633788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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