View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15428_low_13 (Length: 521)

Name: NF15428_low_13
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15428_low_13
NF15428_low_13
[»] chr3 (12 HSPs)
chr3 (1-505)||(28043130-28043634)
chr3 (311-395)||(28041727-28041812)
chr3 (130-248)||(19649600-19649718)
chr3 (126-248)||(28406488-28406610)
chr3 (131-245)||(40198405-40198519)
chr3 (126-209)||(12747757-12747840)
chr3 (172-245)||(3731430-3731503)
chr3 (138-199)||(44118253-44118314)
chr3 (139-184)||(45746489-45746534)
chr3 (137-209)||(12064969-12065041)
chr3 (127-218)||(40460351-40460443)
chr3 (126-218)||(53441958-53442050)
[»] scaffold0002 (1 HSPs)
scaffold0002 (125-245)||(423252-423372)
[»] chr2 (8 HSPs)
chr2 (126-219)||(9152429-9152522)
chr2 (130-249)||(12962714-12962833)
chr2 (129-249)||(7833290-7833410)
chr2 (126-249)||(41153131-41153254)
chr2 (138-180)||(4755479-4755521)
chr2 (194-248)||(12486065-12486119)
chr2 (135-209)||(28248993-28249067)
chr2 (126-175)||(43713979-43714028)
[»] chr7 (4 HSPs)
chr7 (129-218)||(41850604-41850693)
chr7 (126-177)||(28020092-28020142)
chr7 (139-184)||(29835169-29835214)
chr7 (129-249)||(16861520-16861638)
[»] chr5 (12 HSPs)
chr5 (135-248)||(35922054-35922166)
chr5 (134-218)||(8235428-8235512)
chr5 (126-249)||(1138238-1138360)
chr5 (158-234)||(14631036-14631112)
chr5 (309-352)||(26026652-26026695)
chr5 (135-202)||(40740353-40740420)
chr5 (126-192)||(7945842-7945908)
chr5 (126-192)||(10495212-10495278)
chr5 (135-209)||(14913166-14913240)
chr5 (126-180)||(22731347-22731401)
chr5 (127-184)||(32902853-32902910)
chr5 (126-218)||(38394433-38394525)
[»] chr4 (10 HSPs)
chr4 (135-228)||(43117895-43117988)
chr4 (129-218)||(45828466-45828555)
chr4 (126-218)||(53225695-53225787)
chr4 (126-209)||(16412239-16412322)
chr4 (126-208)||(46434104-46434186)
chr4 (135-248)||(4698644-4698757)
chr4 (158-209)||(20459052-20459103)
chr4 (126-184)||(39834279-39834337)
chr4 (132-176)||(23042607-23042651)
chr4 (126-218)||(44111796-44111888)
[»] chr8 (4 HSPs)
chr8 (127-218)||(7693084-7693175)
chr8 (126-218)||(10839768-10839860)
chr8 (127-184)||(43332566-43332623)
chr8 (135-227)||(15726801-15726893)
[»] chr6 (5 HSPs)
chr6 (129-220)||(7649807-7649898)
chr6 (127-234)||(13417421-13417528)
chr6 (125-249)||(30627827-30627951)
chr6 (160-209)||(25778996-25779045)
chr6 (158-226)||(30732411-30732478)
[»] chr1 (6 HSPs)
chr1 (126-249)||(26760193-26760316)
chr1 (126-192)||(29892207-29892273)
chr1 (138-246)||(15699481-15699589)
chr1 (135-209)||(34146864-34146938)
chr1 (127-184)||(51612992-51613049)
chr1 (126-218)||(50155349-50155441)
[»] scaffold0110 (1 HSPs)
scaffold0110 (126-177)||(1624-1675)
[»] scaffold0015 (1 HSPs)
scaffold0015 (126-180)||(17390-17444)
[»] scaffold0032 (1 HSPs)
scaffold0032 (139-220)||(47248-47329)
[»] scaffold0474 (1 HSPs)
scaffold0474 (132-184)||(11761-11813)


Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Complemental strand, 28043634 - 28043130
Alignment:
Q  1 cggtgtgttgcgagttgaatttttgagtgaaagacttttgaaggttaagtctatattttgatatcgtatggtacnnnnnnnnnnnnnnnnnnnaatatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||                   |||||||    
T  28043634 cggtgtgttgcgagttgaatttttgagtgaaagacttttgaagtttaagtctatattttgatatcgtatggtactttttatttttttatttttaatatat 28043535  T
Q  101 gtaagaatgtttttctatgcttatactccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatat 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  28043534 gtaagaatgtttttctatgcttatacttcggtcttatttataagaaactattgattatttagattcattgaataattaatgtatatggtttaaaatatat 28043435  T
Q  201 accaaatacgtcaattattctataaatctcaaaactcaattgtttcttaaaaagg-taaaagaacaacattatacacgagtatatataatatcatattgt 299  Q
    ||||||||||||||||||| ||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28043434 accaaatacgtcaattattttataaatctcaaaactcaat--tttcttaaaaaggctaaaagaacaacattatacacgagtatatataatatcatattgt 28043337  T
Q  300 cannnnnnnaaatattaaatataatatcaaaatatagatttaaccgtcctaaactctcccatctaaaagtctccaaaaaccaacttacaaacacatcctt 399  Q
    |        ||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28043336 cctttttttaaatattaaatatgatatcaaaatatagatttaaccctcctaaactctcccatgtaaaagtctccaaaaaccaacttacaaacacatcctt 28043237  T
Q  400 agggtcagtttgagaggaggattaaaaacattcttaca-gttgatccaattaaagcacaagatgtattttgatagatattttagaaacttacattgtcgt 498  Q
    |||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28043236 agggtctgtttgagaggaagattaaaaacattcttacatgttgatccaattaaagcacaagatgtattttgatagatattttagaaacttacattgtcgt 28043137  T
Q  499 ctattgt 505  Q
    |||||||    
T  28043136 ctattgt 28043130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 311 - 395
Target Start/End: Complemental strand, 28041812 - 28041727
Alignment:
Q  311 atattaaatataatatcaaaatatagatttaaccgtcct-aaactctcccatctaaaagtctccaaaaaccaacttacaaacacat 395  Q
    ||||||||||||||||||||||||||||||| || || | |||||||| |||| |||||| ||||||||||||||| |||||||||    
T  28041812 atattaaatataatatcaaaatatagatttagccctcataaaactctctcatccaaaagtgtccaaaaaccaacttgcaaacacat 28041727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 248
Target Start/End: Complemental strand, 19649718 - 19649600
Alignment:
Q  130 ggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattctataaatct 229  Q
    |||| |||||| |||||||  |||||| |||||||||||| | ||||| || |||  ||| ||||||||| || |||||| |||||||||| || ||||     
T  19649718 ggtcctatttacaagaaacatttgattttttagattcattgagtaattgatgtattcggtctaaaatatagactaaatacatcaattattcaatgaatca 19649619  T
Q  230 caaaactcaattgtttctt 248  Q
     |||| |||| ||||||||    
T  19649618 aaaaagtcaaatgtttctt 19649600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 248
Target Start/End: Complemental strand, 28406610 - 28406488
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattctataa 225  Q
    |||||||| |||||| ||||||| ||||| | ||||| |||||| ||||||| || ||   ||| || |||||| ||||||||| | |||||||| |  |    
T  28406610 ctccggtcctatttacaagaaacaattgactttttaggttcattgaataatttatgtacccggtctagaatatagaccaaatacattaattattcaacga 28406511  T
Q  226 atctcaaaactcaattgtttctt 248  Q
    |||| |||| |||||||||||||    
T  28406510 atctaaaaagtcaattgtttctt 28406488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 245
Target Start/End: Original strand, 40198405 - 40198519
Alignment:
Q  131 gtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattctataaatctc 230  Q
    |||||||||||||||||| ||||| | |||  ||||||| ||||||| || |||  ||| || |||||  |||| |||| |||||| ||| ||||||||     
T  40198405 gtcttatttataagaaacaattgaatttttttattcattgaataatttatgtattcggtctagaatatcgaccagatacatcaattgttcaataaatcta 40198504  T
Q  231 aaaactcaattgttt 245  Q
    |||| ||||||||||    
T  40198505 aaaagtcaattgttt 40198519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 209
Target Start/End: Complemental strand, 12747840 - 12747757
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatac 209  Q
    |||||||| |||||||||||||  ||||||| |||||||||||  | ||||| || ||| |||| || |||||| |||||||||    
T  12747840 ctccggtcctatttataagaaaaaattgattttttagattcatcgagtaattgatgtatttggtctagaatatacaccaaatac 12747757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 3731430 - 3731503
Alignment:
Q  172 ataattaatatatatggtttaaaatatataccaaatacgtcaattattctataaatctcaaaactcaattgttt 245  Q
    |||||| |||||| | || ||||||||||| |||||||||||||||||| ||  |||| |||  ||||||||||    
T  3731430 ataattgatatatttagtctaaaatatatatcaaatacgtcaattattcaatgtatctaaaatgtcaattgttt 3731503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 44118314 - 44118253
Alignment:
Q  138 ttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatata 199  Q
    ||||||||||| ||||| | ||||||||||||| ||||||||| ||||| |||  |||||||    
T  44118314 ttataagaaacaattgactttttagattcattatataattaatgtatattgttataaatata 44118253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 45746489 - 45746534
Alignment:
Q  139 tataagaaactattgattatttagattcattaaataattaatatat 184  Q
    |||||||||| ||||||| |||||||| ||| ||||||||||||||    
T  45746489 tataagaaacaattgattttttagatttattgaataattaatatat 45746534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 209
Target Start/End: Complemental strand, 12065041 - 12064969
Alignment:
Q  137 tttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatac 209  Q
    |||||||||||  ||||| | |||| ||||||||| |||||||||||| | || || |||||| |||||||||    
T  12065041 tttataagaaaaaattgactttttaaattcattaagtaattaatatatttagtatagaatatagaccaaatac 12064969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 40460351 - 40460443
Alignment:
Q  127 tccggtcttatttataagaaactattgattatttagattcattaaataatt-aatatatatggtttaaaatatataccaaatacgtcaattat 218  Q
    |||||||||||||||||||||  ||| | | ||||||||||||   ||||| ||| ||| | |||||||||||| ||||||||| ||| ||||    
T  40460351 tccggtcttatttataagaaaaaattaactttttagattcattgtgtaattaaatgtatcttgtttaaaatatagaccaaatacatcatttat 40460443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 53442050 - 53441958
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattat 218  Q
    |||||||| |||||||||||||   |||| | |||| ||||||| |||||||||| ||  |||| || ||| |||||||||||| ||| ||||    
T  53442050 ctccggtcctatttataagaaaaagttgactttttaaattcattgaataattaatgtacttggtatagaatgtataccaaatacatcatttat 53441958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 125 - 245
Target Start/End: Original strand, 423252 - 423372
Alignment:
Q  125 actccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattctata 224  Q
    ||||||||||||| |||||||||| ||| ||  |||||||| ||| ||||||| ||  |||||| ||| |||||| ||| ||||| |||||||||| ||     
T  423252 actccggtcttatatataagaaacaattcatattttagatttattgaataattgatgcatatggattagaatatagaccgaatacatcaattattcaatg 423351  T
Q  225 aatctcaaaactcaattgttt 245  Q
    ||||| |||| ||||||||||    
T  423352 aatctaaaaagtcaattgttt 423372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 9152522 - 9152429
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattatt 219  Q
    ||||||||||||||| ||||||| ||||| | |||||||||||| | ||||| || ||| | || ||||||||| ||||||||| |||||||||    
T  9152522 ctccggtcttatttacaagaaacaattgactttttagattcattgagtaattgatgtatctagtctaaaatatagaccaaatacatcaattatt 9152429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 130 - 249
Target Start/End: Original strand, 12962714 - 12962833
Alignment:
Q  130 ggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattctataaatct 229  Q
    ||||||||||||||||||   |||| | |||||||||||| | |||||||| ||  |||| ||||||||| ||||||||| ||| |||| | || ||||     
T  12962714 ggtcttatttataagaaaaagttgactttttagattcattgagtaattaatgtacttggtataaaatatagaccaaatacatcatttatgcaatgaatca 12962813  T
Q  230 caaaactcaattgtttctta 249  Q
     |||| |||| |||||||||    
T  12962814 aaaaagtcaaatgtttctta 12962833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 249
Target Start/End: Original strand, 7833290 - 7833410
Alignment:
Q  129 cggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattctataaatc 228  Q
    ||||||||| |||||||||| ||  ||| |||||||||||| ||||||| || ||| || ||||||||||| | || |||| | || ||||  |||||||    
T  7833290 cggtcttatatataagaaacaatcaattttttagattcattgaataattgatgtatctgatttaaaatatagatcagatacattaactatttaataaatc 7833389  T
Q  229 tcaaaactcaattgtttctta 249  Q
    | |||| | || |||||||||    
T  7833390 taaaaaattaagtgtttctta 7833410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 249
Target Start/End: Complemental strand, 41153254 - 41153131
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattctataa 225  Q
    ||||| || |||||||||||||   |||| | |||||||||||| | ||||| || ||| ||||||| |||||| ||||||||| ||| |||| | || |    
T  41153254 ctccgatcctatttataagaaaaagttgactttttagattcattgagtaattgatgtatttggtttataatatagaccaaatacatcatttatgcaatga 41153155  T
Q  226 atctcaaaactcaattgtttctta 249  Q
    |||  |||| |||| |||||||||    
T  41153154 atcaaaaaagtcaaatgtttctta 41153131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 4755479 - 4755521
Alignment:
Q  138 ttataagaaactattgattatttagattcattaaataattaat 180  Q
    ||||||||||| ||| ||| |||||||||||||||||||||||    
T  4755479 ttataagaaacaattaattttttagattcattaaataattaat 4755521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 12486065 - 12486119
Alignment:
Q  194 aatatataccaaatacgtcaattattctataaatctcaaaactcaattgtttctt 248  Q
    |||||| ||||||||| |||||||||| || ||||| |||| |||||||||||||    
T  12486065 aatatagaccaaatacatcaattattcaatgaatctaaaaagtcaattgtttctt 12486119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 28249067 - 28248993
Alignment:
Q  135 tatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatac 209  Q
    |||||||||||||   |||| | ||||||||||||||||||||||| ||| |||| || |||||| || ||||||    
T  28249067 tatttataagaaaaagttgactttttagattcattaaataattaatgtatttggtatagaatatagactaaatac 28248993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 43713979 - 43714028
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataa 175  Q
    ||||| ||||||||||||||||| ||||||| ||| |||||||| |||||    
T  43713979 ctccgctcttatttataagaaacaattgatttttttgattcattgaataa 43714028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 41850604 - 41850693
Alignment:
Q  129 cggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattat 218  Q
    |||||||||||||||||||   || ||| |||||||||||| |||||||||| ||| |||| ||||||||| | ||||||| ||| ||||    
T  41850604 cggtcttatttataagaaaaagttaattttttagattcattgaataattaatgtatttggtataaaatatagagcaaatacatcatttat 41850693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 28020142 - 28020092
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataatt 177  Q
    |||||||||||||||||| |||  ||||||| ||||||||||||||||||||    
T  28020142 ctccggtcttatttataaaaaaa-attgattttttagattcattaaataatt 28020092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 29835214 - 29835169
Alignment:
Q  139 tataagaaactattgattatttagattcattaaataattaatatat 184  Q
    |||||||||||||| | | |||||||||||| ||||||||||||||    
T  29835214 tataagaaactattaactttttagattcattgaataattaatatat 29835169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 249
Target Start/End: Original strand, 16861520 - 16861638
Alignment:
Q  129 cggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattctataaatc 228  Q
    ||||||||| ||||| |||| ||||| | |||||||||||| ||||||| || ||||| || ||||| |||  ||  |||| | |||||||| || ||||    
T  16861520 cggtcttatatataaaaaacaattgactttttagattcattgaataattgatgtatatagtctaaaa-atagcccggatacattaattattcaatgaatc 16861618  T
Q  229 tcaaaactcaattgtttctta 249  Q
     ||||| ||||||||||||||    
T  16861619 -caaaagtcaattgtttctta 16861638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 248
Target Start/End: Original strand, 35922054 - 35922166
Alignment:
Q  135 tatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattctataaatctcaaaa 234  Q
    |||||| || |||| ||| ||| |||||||||||||||||||| ||||||  ||| || |||||| ||||||||| |||||||||  || ||| | ||||    
T  35922054 tatttacaataaacaattaattttttagattcattaaataatttatatat-cggtatagaatatagaccaaatacatcaattatttaatgaatttaaaaa 35922152  T
Q  235 ctcaattgtttctt 248  Q
     |||||||||||||    
T  35922153 ttcaattgtttctt 35922166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 8235512 - 8235428
Alignment:
Q  134 ttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattat 218  Q
    ||||||||||||||  ||||||| |||||||| ||| |||||||||||||| |||| || |||||| | ||||||| ||| ||||    
T  8235512 ttatttataagaaaaaattgattttttagatttattgaataattaatatatttggtctataatataaatcaaatacatcatttat 8235428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 126 - 249
Target Start/End: Complemental strand, 1138360 - 1138238
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattctataa 225  Q
    ||||| || |||||||||||||  ||||||| |||| |||||||||||||||||| ||| | |  || || ||| ||||||||| | |||||||| ||||    
T  1138360 ctccgatcatatttataagaaaaaattgattttttaaattcattaaataattaatgtatctagactagaa-atagaccaaatacattaattattcaataa 1138262  T
Q  226 atctcaaaactcaattgtttctta 249  Q
    |||  |||| | ||||||||||||    
T  1138261 atcaaaaaagtaaattgtttctta 1138238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 14631036 - 14631112
Alignment:
Q  158 tttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattctataaatctcaaaa 234  Q
    |||||||||||| ||||| |||||||| | || || ||||||||||| |||| ||| |||||| |||||||| ||||    
T  14631036 tttagattcattgaataaataatatatgtagtctagaatatataccacatacatcacttattcaataaatctaaaaa 14631112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 352
Target Start/End: Complemental strand, 26026695 - 26026652
Alignment:
Q  309 aaatattaaatataatatcaaaatatagatttaaccgtcctaaa 352  Q
    |||||| |||||||||||||||||||||||||| || |||||||    
T  26026695 aaatatcaaatataatatcaaaatatagatttagccctcctaaa 26026652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 202
Target Start/End: Original strand, 40740353 - 40740420
Alignment:
Q  135 tatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatatac 202  Q
    |||||| ||||||| || |||| |||||||| ||||||||||| || ||| |||| ||||||||||||    
T  40740353 tatttacaagaaacaatcgattttttagatttattaaataattgatgtatttggtctaaaatatatac 40740420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 7945842 - 7945908
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggttta 192  Q
    |||||||| |||||| ||||||| ||| | | ||||||| |||||||||||| |||||| |||||||    
T  7945842 ctccggtcctatttacaagaaacaatttactttttagatacattaaataatttatatatttggttta 7945908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 10495212 - 10495278
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggttta 192  Q
    ||||||||||||||||||| || | |||||| |||||||||||| ||||| | || ||| |||||||    
T  10495212 ctccggtcttatttataagtaaattttgattttttagattcattcaataaatgatgtatgtggttta 10495278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 14913240 - 14913166
Alignment:
Q  135 tatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatac 209  Q
    |||||||||||||   |||||| |||| ||||||| | |||||||||||| || | ||||||||| |||||||||    
T  14913240 tatttataagaaaaatttgattttttaaattcattgagtaattaatatatttgatataaaatatagaccaaatac 14913166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 22731401 - 22731347
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataattaat 180  Q
    |||||||| |||||||||||||   || ||| |||||||||||||||||||||||    
T  22731401 ctccggtcctatttataagaaaaagttaattttttagattcattaaataattaat 22731347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 32902910 - 32902853
Alignment:
Q  127 tccggtcttatttataagaaactattgattatttagattcattaaataattaatatat 184  Q
    |||||||||||||||||||||  ||||  | |||| ||||||| ||||||||||||||    
T  32902910 tccggtcttatttataagaaaaaattgtctttttaaattcattgaataattaatatat 32902853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 38394433 - 38394525
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattat 218  Q
    ||||| || |||||||||||||  ||||| | |||||||||||| |||||||||| ||  |||| || ||| || ||||||||| ||| ||||    
T  38394433 ctccgatcctatttataagaaaaaattgactttttagattcattgaataattaatgtacttggtatagaatgtagaccaaatacatcatttat 38394525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 43117988 - 43117895
Alignment:
Q  135 tatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattctataaatc 228  Q
    |||||||||||||  ||||||| |||| ||||||| ||||||| || ||| |||| ||||||||| ||||||||| ||| |||| | |||||||    
T  43117988 tatttataagaaaaaattgattttttacattcattgaataattgatgtatttggtataaaatatagaccaaatacatcatttatgcaataaatc 43117895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 129 - 218
Target Start/End: Complemental strand, 45828555 - 45828466
Alignment:
Q  129 cggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattat 218  Q
    ||||| |||||||||||||  ||||||| |||||||||||| | |||||||| ||| |||| || |||||| ||||||||| ||| ||||    
T  45828555 cggtcctatttataagaaaaaattgattttttagattcattgagtaattaatgtatttggtctataatataaaccaaatacatcatttat 45828466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 53225787 - 53225695
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattat 218  Q
    |||||||| |||||||||||||  ||||| | |||||||||||| |||||||||| ||| |||| || ||| || ||||||||| ||| ||||    
T  53225787 ctccggtcctatttataagaaaaaattgactttttagattcattgaataattaatgtatttggtatagaatgtagaccaaatacatcatttat 53225695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 16412239 - 16412322
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatac 209  Q
    |||||||  |||||||||||||  ||||| | |||||||||||| ||||||| |||||| |||| || |||||| |||||||||    
T  16412239 ctccggttctatttataagaaaaaattgactttttagattcattgaataattgatatatttggtctagaatatagaccaaatac 16412322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 208
Target Start/End: Original strand, 46434104 - 46434186
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaata 208  Q
    |||||||||||||||||| |||   |||| | ||||||||| |||| |||||||||||||| ||||| |||||| | ||||||    
T  46434104 ctccggtcttatttataaaaaatatttgactttttagattctttaagtaattaatatatattgtttagaatatagatcaaata 46434186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 248
Target Start/End: Complemental strand, 4698757 - 4698644
Alignment:
Q  135 tatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattctataaatctcaaaa 234  Q
    |||||| || |||| ||||||| ||||||| |||| ||||||| || |||||||| || ||| || |||| |||| | |||||||| ||  |||| ||||    
T  4698757 tatttacaataaacaattgattttttagatacattgaataatttatgtatatggtctagaatctaaaccagatacataaattattcaatgtatctaaaaa 4698658  T
Q  235 ctcaattgtttctt 248  Q
     |||||||||||||    
T  4698657 ttcaattgtttctt 4698644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 20459052 - 20459103
Alignment:
Q  158 tttagattcattaaataattaatatatatggtttaaaatatataccaaatac 209  Q
    ||||| |||||||||||||||||||||||| |||||||| || |||| ||||    
T  20459052 tttaggttcattaaataattaatatatatgttttaaaatgtagaccagatac 20459103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 39834279 - 39834337
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataattaatatat 184  Q
    ||||||||||||||| |||| || ||| ||| ||||||| |||||||||||| ||||||    
T  39834279 ctccggtcttatttacaagagacaatttattttttagatacattaaataatttatatat 39834337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 176
Target Start/End: Original strand, 23042607 - 23042651
Alignment:
Q  132 tcttatttataagaaactattgattatttagattcattaaataat 176  Q
    ||||||||||||||||| |||||||||||| ||| ||| ||||||    
T  23042607 tcttatttataagaaacaattgattatttaaatttattgaataat 23042651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 44111888 - 44111796
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattat 218  Q
    ||||||||||||||||||||||   |||| | |||||||||||| | ||||| || ||| |  |||| |||||| ||||||||| ||| ||||    
T  44111888 ctccggtcttatttataagaaaaagttgactttttagattcattgagtaattgatgtatcttctttagaatatagaccaaatacatcatttat 44111796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 218
Target Start/End: Complemental strand, 7693175 - 7693084
Alignment:
Q  127 tccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattat 218  Q
    ||||||| |||||||||||||  ||||| | |||||||||||| | |||||||| ||| |||| ||||||||| || |||||| ||| ||||    
T  7693175 tccggtcctatttataagaaaaaattgactttttagattcattgagtaattaatgtatttggtataaaatatagactaaatacatcatttat 7693084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 10839768 - 10839860
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattat 218  Q
    |||| ||| |||||||||||||  ||||| | |||||||||||| |||||||||| ||  |||| || |||||| ||||||||| ||| ||||    
T  10839768 ctccagtcctatttataagaaaaaattgactttttagattcattgaataattaatgtacttggtatagaatatagaccaaatacatcatttat 10839860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 43332566 - 43332623
Alignment:
Q  127 tccggtcttatttataagaaactattgattatttagattcattaaataattaatatat 184  Q
    ||||||| ||||||||||||| | |||| | |||||||||||| | ||||||||||||    
T  43332566 tccggtcctatttataagaaaattttgactttttagattcattgagtaattaatatat 43332623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 15726893 - 15726801
Alignment:
Q  135 tatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattctataaat 227  Q
    |||||||||||||  ||||| | |||||||||||| | ||||| |  ||| | ||||||||||||||| |||||| ||| |||| | ||||||    
T  15726893 tatttataagaaaaaattgactttttagattcattgagtaattgacttatcttgtttaaaatatatacaaaatacatcatttatgcgataaat 15726801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 129 - 220
Target Start/End: Original strand, 7649807 - 7649898
Alignment:
Q  129 cggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattc 220  Q
    ||||||||||||||| |||  |||   | |||||||||||| ||||||| || ||| |||| ||||||||||||||||||  ||||||||||    
T  7649807 cggtcttatttataataaataattatctttttagattcattgaataattgatgtatttggtctaaaatatataccaaataaatcaattattc 7649898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 234
Target Start/End: Original strand, 13417421 - 13417528
Alignment:
Q  127 tccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattctataaa 226  Q
    |||| ||||||||| |||| ||  |||||| |||| ||||||| ||||||| ||  ||  ||||||||||||| || |||||| |||||||||| |||||    
T  13417421 tccgatcttatttacaagatacagttgattttttaaattcatttaataattgatgcatcaggtttaaaatataaactaaatacatcaattattcaataaa 13417520  T
Q  227 tctcaaaa 234  Q
    ||| ||||    
T  13417521 tctaaaaa 13417528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 249
Target Start/End: Original strand, 30627827 - 30627951
Alignment:
Q  125 actccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattctata 224  Q
    |||||||||||||||||||||||   |||||| |||| ||| ||| | ||||| || ||| | || ||||||||| ||||||||| ||| |||| | ||     
T  30627827 actccggtcttatttataagaaaaatttgattttttatatttattgagtaattgatgtatcttgtctaaaatatagaccaaatacatcatttatgcaatg 30627926  T
Q  225 aatctcaaaactcaattgtttctta 249  Q
    ||||  |||| |||| |||||||||    
T  30627927 aatcagaaaagtcaaatgtttctta 30627951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 25779045 - 25778996
Alignment:
Q  160 tagattcattaaataattaatatatatggtttaaaatatataccaaatac 209  Q
    |||||||||| ||||||||||||||||| |||| |||||| | |||||||    
T  25779045 tagattcattgaataattaatatatatgttttacaatatagatcaaatac 25778996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 226
Target Start/End: Complemental strand, 30732478 - 30732411
Alignment:
Q  158 tttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattctataaa 226  Q
    |||||||||||||||||| | |||||| |||| || ||| || ||||||||| |||||||||| |||||    
T  30732478 tttagattcattaaataactgatatatttggtctataat-tagaccaaatacatcaattattcaataaa 30732411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 126 - 249
Target Start/End: Complemental strand, 26760316 - 26760193
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattctataa 225  Q
    |||||||| |||||||||||||  ||||||| |||| ||||||| | | |||||| ||  |||| || |||||| ||||||||| ||| |||||| || |    
T  26760316 ctccggtcctatttataagaaaaaattgattttttaaattcattgagtcattaatgtacttggtatagaatatagaccaaatacatcatttattcaatga 26760217  T
Q  226 atctcaaaactcaattgtttctta 249  Q
    |||  |||| |||| |||||||||    
T  26760216 atcaaaaaagtcaaatgtttctta 26760193  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 29892273 - 29892207
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggttta 192  Q
    |||||||| |||||||| ||||| ||||| | |||||||||||| ||||||| |||||| |||||||    
T  29892273 ctccggtcctatttataggaaacaattgactttttagattcattcaataattgatatatctggttta 29892207  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 15699481 - 15699589
Alignment:
Q  138 ttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattctataaatctcaaaactc 237  Q
    |||||||||||| |||||| |||||||||||| | |||||||| ||| | |||  ||||||| || | |||| ||| |||| | ||||| || |||| ||    
T  15699481 ttataagaaacttttgattttttagattcattgagtaattaatgtatcttgttgtaaatatagactagatacatcacttatacaataaacctaaaaattc 15699580  T
Q  238 aattgtttc 246  Q
    |||||||||    
T  15699581 aattgtttc 15699589  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 34146938 - 34146864
Alignment:
Q  135 tatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatac 209  Q
    |||||||||||||  ||||||| ||| |||||||| |||||||||| ||| || | || |||||||| |||||||    
T  34146938 tatttataagaaaaaattgatttttttgattcattgaataattaatgtatttgatctagaatatatatcaaatac 34146864  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 51613049 - 51612992
Alignment:
Q  127 tccggtcttatttataagaaactattgattatttagattcattaaataattaatatat 184  Q
    ||||||||||| ||||||||| ||||  || ||||||| |||| ||||||||||||||    
T  51613049 tccggtcttatatataagaaaatattatttttttagatacattgaataattaatatat 51612992  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 50155441 - 50155349
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattat 218  Q
    |||||||| |||||||||||||   |||| | |||||||||||| | ||||| || ||| |||| || |||||| ||||||||| ||| ||||    
T  50155441 ctccggtcctatttataagaaaaagttgactttttagattcattgagtaattgatgtatttggtctataatatagaccaaatacatcatttat 50155349  T

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Target: scaffold0110 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 1675 - 1624
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataatt 177  Q
    ||||||||||||||||||||||  ||| ||| |||||||||||| |||||||    
T  1675 ctccggtcttatttataagaaaaaattaattttttagattcattgaataatt 1624  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 17390 - 17444
Alignment:
Q  126 ctccggtcttatttataagaaactattgattatttagattcattaaataattaat 180  Q
    ||||||||||  |||||||||||| |||||| |||||||||||| | ||||||||    
T  17390 ctccggtctttattataagaaacttttgattttttagattcattgagtaattaat 17444  T

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Target: scaffold0032 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 220
Target Start/End: Original strand, 47248 - 47329
Alignment:
Q  139 tataagaaactattgattatttagattcattaaataattaatatatatggtttaaaatatataccaaatacgtcaattattc 220  Q
    ||||||||| ||||  || ||||| |||||| |||||||||||| | || |||||||| || ||||||||| | ||||||||    
T  47248 tataagaaaatattatttttttaggttcattgaataattaatatttctgttttaaaatgtagaccaaatacattaattattc 47329  T

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Target: scaffold0474 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0474
Description:

Target: scaffold0474; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 11761 - 11813
Alignment:
Q  132 tcttatttataagaaactattgattatttagattcattaaataattaatatat 184  Q
    ||||||||||||||||| ||||||| | |||||  ||| ||||||||||||||    
T  11761 tcttatttataagaaacaattgattttgtagataaattgaataattaatatat 11813  T

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