View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15428_low_15 (Length: 457)

Name: NF15428_low_15
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15428_low_15
NF15428_low_15
[»] chr5 (11 HSPs)
chr5 (18-440)||(1760551-1760975)
chr5 (45-412)||(1739509-1739888)
chr5 (45-412)||(1744846-1745228)
chr5 (21-124)||(1715373-1715478)
chr5 (343-432)||(1724729-1724818)
chr5 (79-263)||(1725313-1725498)
chr5 (290-436)||(1739314-1739467)
chr5 (343-432)||(1724867-1724956)
chr5 (56-110)||(1763948-1764004)
chr5 (78-124)||(1715483-1715528)
chr5 (384-432)||(1725134-1725182)
[»] chr3 (5 HSPs)
chr3 (98-319)||(3156413-3156640)
chr3 (228-319)||(3167651-3167745)
chr3 (348-432)||(2023098-2023182)
chr3 (45-157)||(3167825-3167940)
chr3 (98-272)||(3138678-3138858)
[»] chr8 (1 HSPs)
chr8 (228-275)||(23852566-23852613)


Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 440
Target Start/End: Complemental strand, 1760975 - 1760551
Alignment:
Q  18 aagaataccaagtcataagttcaacttgagtagcaattaaattaacaatgacattgaca--ggaaacaaaatataaaactgaatttaaagcttaagtgat 115  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||    
T  1760975 aagaataccaagtcataagttcaactagagtagcaattaaattaacaatgacattgacacagaaaacaaaatataaaactgaatttaaagcttaagtgat 1760876  T
Q  116 aaatcaagcgcacaagattccgaattggaggattcttcttcaaagttgaactttgattgatgaatatcatcctcagtataagtaagagacacattatttt 215  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  1760875 aaatcaagcgcataagattccgaattggaggattcttcttcaaagttgaactttgattgatgaatatcatcttcggtataagtaagagacacattatttt 1760776  T
Q  216 tattgtgtatgattgagtttgaacttgtatcaacatttgtagaagaatatccgaattttagaattgaagtgatattatttgtaccatcttctatccttga 315  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1760775 tattgtgtatgattgagtttgaacttgtatcaatatttgtagaagaatatccgaattttagaattgaagtgatattatttgtaccatcttctatccttga 1760676  T
Q  316 agtagaccaaatcctaaattttcagccccactattactattactaccatcaaaatttcacagactaacaagagaagggtttaatatctctttcaaactca 415  Q
    | ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1760675 aatagaccaaatcctaaattttcagccccactattactattacaaccctcaaaatttctcagactaacaagagaagggtttaatatctctttcaaactca 1760576  T
Q  416 aaacactattactatactcaatatt 440  Q
    |||||| ||||||||||||||||||    
T  1760575 aaacaccattactatactcaatatt 1760551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 412
Target Start/End: Complemental strand, 1739888 - 1739509
Alignment:
Q  45 gagtagcaattaaattaacaatgacattgacaggaaa-caaaatataaaact-gaatttaaagcttaagtgataaatcaagcgcacaagattccgaattg 142  Q
    |||||||||| |||| ||||   ||||||||| |||| |||||||||||| | ||||||||||| ||||||||||||||||| || | || ||  |||||    
T  1739888 gagtagcaatcaaatcaacagcaacattgacatgaaaacaaaatataaaaattgaatttaaagcctaagtgataaatcaagcccagacgaatcataattg 1739789  T
Q  143 gaggattcttcttcaaagttgaactttgattgatgaatatcatcctcagtataagtaagagacacattatttttattgtgtatgattgagtttgaacttg 242  Q
    ||||||||||||||  |||| ||||| ||  ||| ||||| |||||  |||  |||| ||  | || |||||||||||| ||||||||   |||||||||    
T  1739788 gaggattcttcttccgagttaaacttagacagatcaatattatccttggtagtagtatgatcctcactatttttattgtttatgattgtacttgaacttg 1739689  T
Q  243 tatcaacatttgtagaagaatatccgaattttagaattgaagtgatatt---atttgtaccatcttctatccttgaagtag-------accaaatcctaa 332  Q
    || |||||||||||||||||| |||  |||||| ||| | |   || ||   ||| ||||||||||| ||||| |||| ||       |||||||||||     
T  1739688 tagcaacatttgtagaagaatctccagattttataatagcaccaatcttgtcattcgtaccatcttcaatcctcgaagcagttgcaccaccaaatcctag 1739589  T
Q  333 attttcagccccactattactattactaccatcaaaatttcacagactaacaagagaagggtttaatatctctttcaaac 412  Q
    | || ||||||||||||||||||| ||||| || | ||||| || ||||||||| |||||||||||||| ||||||||||    
T  1739588 aattccagccccactattactattgctaccctccatatttctcaaactaacaagcgaagggtttaatatatctttcaaac 1739509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 45 - 412
Target Start/End: Complemental strand, 1745228 - 1744846
Alignment:
Q  45 gagtagcaattaaattaacaatgacattgacaggaaa-caaaatataaaa-ctgaatttaaagcttaagtgataaatcaagcgcacaagattccgaattg 142  Q
    |||||||||| |||||||||   |||||| || |||| |||||||||||| ||||||||||||| ||||||||||||||||| || | || ||  |||||    
T  1745228 gagtagcaatcaaattaacagcaacattgccatgaaaacaaaatataaaaactgaatttaaagcctaagtgataaatcaagcccagacgaatcataattg 1745129  T
Q  143 gaggattcttcttcaaagttgaactttgattgatgaatatcatcct---cagtataagtaagagacacattatttttattgtgtatgattgagtttgaac 239  Q
    ||||||||||||||   ||||||||| ||   || |||||||||||     |||  |||| ||  |||| |||||||||||| |||||||| | ||||||    
T  1745128 gaggattcttcttctgcgttgaacttcgacaaatcaatatcatccttgctggtagtagtaggatccacactatttttattgtttatgattgtgcttgaac 1745029  T
Q  240 ttgtatcaacatttgtagaagaatatccgaattttagaattg---aagtgatattatttgtaccatcttctatccttgaagtag-------accaaatcc 329  Q
    ||||  |||||||||||||||||| ||| |||||   ||| |    | |  | |||||  |||||||||| |||||||||| ||       |||||||||    
T  1745028 ttgtggcaacatttgtagaagaatctccaaatttagtaatagcaccaatcttgttattcataccatcttcaatccttgaagcagttgcaccaccaaatcc 1744929  T
Q  330 taaattttcagccccactattactattactaccatcaaaatttcacagactaacaagagaagggtttaatatctctttcaaac 412  Q
    |||| || ||| ||||||||||||||| ||||| |    ||||| || ||||| ||| |||||||||||||| ||||||||||    
T  1744928 taaaattccagtcccactattactattgctacccttcgtatttctcaaactaaaaagtgaagggtttaatatatctttcaaac 1744846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 124
Target Start/End: Original strand, 1715373 - 1715478
Alignment:
Q  21 aataccaagtcataagttcaacttgag--tagcaattaaattaacaatgacattgaca-ggaaacaaaatataaaactgaatttaaagcttaagtgataa 117  Q
    ||||||||| ||||||||| ||| |||  || |||| ||||||||||| ||||||||| |||||||||||||||||||||| ||| ||||||||||| ||    
T  1715373 aataccaagacataagttccactagagagtaacaatcaaattaacaataacattgacatggaaacaaaatataaaactgaa-ttagagcttaagtgacaa 1715471  T
Q  118 atcaagc 124  Q
    |||||||    
T  1715472 atcaagc 1715478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 432
Target Start/End: Complemental strand, 1724818 - 1724729
Alignment:
Q  343 ccactattactattactaccatcaaaatttcacagactaacaagagaagggtttaatatctctttcaaactcaaaacactattactatac 432  Q
    ||||||||| |||||||||| || | ||||| || ||||||||||||||||||||| ||||||| ||||| |||| ||| |||| |||||    
T  1724818 ccactattattattactaccctccatatttctcaaactaacaagagaagggtttaacatctcttgcaaacccaaagcaccattattatac 1724729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 263
Target Start/End: Complemental strand, 1725498 - 1725313
Alignment:
Q  79 aaacaaaatataaaa-ctgaatttaaagcttaagtgataaatcaagcgcacaagattccgaattggaggattcttcttcaaagttgaactttgattgatg 177  Q
    ||||||||||||||| || |||||||||  | ||||| ||||||||| |||| || ||  ||||||||||||||||||||   |||||||| ||   ||     
T  1725498 aaacaaaatataaaaactaaatttaaagtcttagtgacaaatcaagcccacatgaatcataattggaggattcttcttcagctttgaacttcgacatatc 1725399  T
Q  178 aatatcatcctcagtataagtaagagacacattatttttattgtgtatgattgagtttgaacttgtatcaacatttgtagaagaat 263  Q
    |||||||||||  ||   ||||  |  |||| |||||||||| | |||||||| ||||||||||||| |||||| | |||||||||    
T  1725398 aatatcatccttggtggtagtagcatccacaatatttttattttttatgattgcgtttgaacttgtagcaacatgtttagaagaat 1725313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 436
Target Start/End: Complemental strand, 1739467 - 1739314
Alignment:
Q  290 ttatttgtaccatcttctatccttgaagtag-------accaaatcctaaattttcagccccactattactattactaccatcaaaatttcacagactaa 382  Q
    ||||||||||||||||| |||||||||||||       ||||||||||| | || |  ||||||  |||||||||||||  || |  |||| || || ||    
T  1739467 ttatttgtaccatcttcaatccttgaagtagttgaaccaccaaatcctagaattcccaccccacggttactattactactctccatgtttctcaaaccaa 1739368  T
Q  383 caagagaagggtttaatatctctttcaaactcaaaacactattactatactcaa 436  Q
    |||||||||| |||||||| |||||||||  |||| ||| ||||||||||||||    
T  1739367 caagagaaggatttaatatatctttcaaatgcaaatcaccattactatactcaa 1739314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 343 - 432
Target Start/End: Complemental strand, 1724956 - 1724867
Alignment:
Q  343 ccactattactattactaccatcaaaatttcacagactaacaagagaagggtttaatatctctttcaaactcaaaacactattactatac 432  Q
    |||||| ||||||||||||| || | ||||  || |||||||| |||||||||||| ||||||| ||||| ||||  || ||||||||||    
T  1724956 ccactagtactattactaccctccatatttttcaaactaacaaaagaagggtttaacatctcttgcaaacccaaagtaccattactatac 1724867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 1764004 - 1763948
Alignment:
Q  56 aaattaacaatgacattgaca-ggaaacaaaatataaaa-ctgaatttaaagcttaa 110  Q
    ||||||||||| |||| |||| ||||||||||||||||| |||||||||||||||||    
T  1764004 aaattaacaataacatcgacatggaaacaaaatataaaaactgaatttaaagcttaa 1763948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 1715483 - 1715528
Alignment:
Q  78 gaaacaaaatataaaactgaatttaaagcttaagtgataaatcaagc 124  Q
    ||||||||||||||||||||| ||| ||||||||||| |||||||||    
T  1715483 gaaacaaaatataaaactgaa-ttagagcttaagtgacaaatcaagc 1715528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 432
Target Start/End: Complemental strand, 1725182 - 1725134
Alignment:
Q  384 aagagaagggtttaatatctctttcaaactcaaaacactattactatac 432  Q
    ||||||||||||||| ||||||| ||||| |||| ||| ||||||||||    
T  1725182 aagagaagggtttaacatctcttgcaaacacaaagcaccattactatac 1725134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 98 - 319
Target Start/End: Original strand, 3156413 - 3156640
Alignment:
Q  98 atttaaagcttaagtgataaatcaagcgcacaagattccgaattggaggattcttcttcaaagttgaactttgattgat---gaatatcatcctcagtat 194  Q
    ||||||||||| ||||||||||||||| || | ||||| ||||  || | ||||| ||||| |||  ||||||||||||   |||||||||| |  |||     
T  3156413 atttaaagcttgagtgataaatcaagctcagatgattcagaatcagaaggttctttttcaatgttagactttgattgatcatgaatatcatctttggtag 3156512  T
Q  195 aagtaagagacacattatttttattgtgtatgattgagtttgaacttgtatcaacatttgtagaagaatatccgaattttagaattgaa---gtgatatt 291  Q
    ||||| ||| |||| || |||  || | |||| ||||||||||||||| | |||||||||||||||||| ||| ||||||||||| | |    |  ||||    
T  3156513 aagtaggagccacaataatttgcttttctatgtttgagtttgaacttgcagcaacatttgtagaagaatctcctaattttagaatagcacctattttatt 3156612  T
Q  292 atttgtaccatcttctatccttgaagta 319  Q
    ||||||||||||||| ||||||||||||    
T  3156613 atttgtaccatcttcaatccttgaagta 3156640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 3167745 - 3167651
Alignment:
Q  228 ttgagtttgaacttgtatcaacatttgtagaagaatatccgaattttagaattg---aagtgatattatttgtaccatcttctatccttgaagta 319  Q
    ||||||||||||||||| |||||||||||||||||| ||| ||||||||||| |    | |  ||||||||||||||||||||||||||||||||    
T  3167745 ttgagtttgaacttgtagcaacatttgtagaagaatctcctaattttagaatagcaccaattttattatttgtaccatcttctatccttgaagta 3167651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 348 - 432
Target Start/End: Complemental strand, 2023182 - 2023098
Alignment:
Q  348 attactattactaccatcaaaatttcacagactaacaagagaagggtttaatatctctttcaaactcaaaacactattactatac 432  Q
    |||||||||||| || || | ||||| || ||||||||||||||||||||||||||||| ||||| |||| ||| ||||| ||||    
T  2023182 attactattactgccctccatatttctcaaactaacaagagaagggtttaatatctcttgcaaacccaaaccaccattaccatac 2023098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 45 - 157
Target Start/End: Complemental strand, 3167940 - 3167825
Alignment:
Q  45 gagtagcaattaaattaacaatgacattgaca---ggaaacaaaatataaaactgaatttaaagcttaagtgataaatcaagcgcacaagattccgaatt 141  Q
    |||||||||| ||||||||||  ||||||||    |||||||||||| |||| |  | ||||||||| ||||||||||||||| || ||||||| ||||     
T  3167940 gagtagcaatcaaattaacaagaacattgacttatggaaacaaaatacaaaaatttaattaaagcttgagtgataaatcaagctcaaaagattcagaatc 3167841  T
Q  142 ggaggattcttcttca 157  Q
     |||| ||||||||||    
T  3167840 agagggttcttcttca 3167825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 272
Target Start/End: Original strand, 3138678 - 3138858
Alignment:
Q  98 atttaaagcttaagtgataaatcaagcgcacaagattccgaattggaggattcttcttcaaagttgaactttgattg---atgaatatcatcctca---g 191  Q
    ||||||||||||||||||||||||||  |  ||||||| ||||  || | ||||||||||| |||| ||||||||||   |||||||||||| |||   |    
T  3138678 atttaaagcttaagtgataaatcaagatcggaagattcagaatcagaaggttcttcttcaatgttggactttgattgatcatgaatatcatcatcattgg 3138777  T
Q  192 tataagtaagagacacattatttttattgtgtatgattgagtttgaacttgtatcaacatttgtagaagaatatccgaatt 272  Q
    || || || ||| |||| || |||  || |  ||| ||||||||||| ||||| |||| ||||||||||||| ||| ||||    
T  3138778 tagaattaggagccacaataatttgcttttccatgtttgagtttgaaattgtagcaacctttgtagaagaatctcccaatt 3138858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 23852613 - 23852566
Alignment:
Q  228 ttgagtttgaacttgtatcaacatttgtagaagaatatccgaatttta 275  Q
    ||||||||||||||||| ||| |||||||||||||| ||| |||||||    
T  23852613 ttgagtttgaacttgtagcaatatttgtagaagaatctcccaatttta 23852566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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