View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15428_low_16 (Length: 449)
Name: NF15428_low_16
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15428_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Complemental strand, 47324440 - 47323998
Alignment:
| Q |
1 |
tctttagccattcctttcatatcataagcttgtgatcttctccaaagacttttcccatgtgtatttgttggattacagagacaaagtgcacgtgttgaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
47324440 |
tctttagccattcctttcatatcataagcttgtgatcttctccaaagacttttcccatgtgtatttgttggattagagagacaaagtgcacgtgttgaat |
47324341 |
T |
|
| Q |
101 |
cacttatagccgaatcaggatttttaagcaacaaattacactcagctttgttactataaatcaccattctttcatttctatacctcaaaggacaaatatt |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47324340 |
cacttatagctgaatcaggatttttaagcaacaaattacactcagctttgttactataaatcaccattctttcatttctatacctcaaaggacaaatatt |
47324241 |
T |
|
| Q |
201 |
aagtgcttcattatatttcaataaagcttcttctacttttcccaaactaaacatatgattcgcttgtcgcttaataaactttgccgtaacccttttttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47324240 |
aagtgcttcattatatttcaataaagcttcttctacttttcccaaactaaacatatgattcgcttgtcgcttaataaactttgccgtaacccttttttct |
47324141 |
T |
|
| Q |
301 |
tccaattttacctctgacataagtttctccttattcctcctaaccatcataatatctagcgaaataagattcgtagaaaatttataatgatgatgattat |
400 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47324140 |
tctaattttacctctgacataagtttctccttattcctcctaaccatcataatatctagcgaaataagattcgtagaaaatttataatgatgatgattat |
47324041 |
T |
|
| Q |
401 |
tattatgtttaagaagtagctctagcacctttgtgatgatgtc |
443 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
47324040 |
tattatgttcaagaagtagctctagcacctttgtgatgatgtc |
47323998 |
T |
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