View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15428_low_18 (Length: 409)
Name: NF15428_low_18
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15428_low_18 |
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| [»] scaffold0204 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 12 - 394
Target Start/End: Original strand, 41414403 - 41414785
Alignment:
| Q |
12 |
actgaaaagaagaattctccttcctagcttatcaactgttgcaatggaaataaatgttgagcaagcaagaacgccacccgtcaaagccgaggagtagagt |
111 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41414403 |
actgataagaagaattctccttcctagcttatcaactgttgcaatggaaataaatgttgagcaagcaagaacgccacccgtcaaagccgaggagtagagt |
41414502 |
T |
|
| Q |
112 |
gaagcgtctcccccaaagcccatgctttgaaacagtactggagcatagaagagaatggcatttatgccagttaagatttgtgaagttggcatgacaattg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41414503 |
gaagcgtctcccccaaagcccatgctttgaaacagtactggagcatagaagagaatggcatttatgccagttaagatttgtgaagttggcatgacaattg |
41414602 |
T |
|
| Q |
212 |
ccatcaccaactctggcctatactttcttttgagtatgttacgaaatgggtgctttattgagttcgccaattcgcttgcttcaaccatatcttcaaactc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41414603 |
ccatcaccaactctggcctatactttcttttaagtatgttacgaaatgggtgctttattgagttcgccaattcgcttgcttcaaccatatcttcaagctc |
41414702 |
T |
|
| Q |
312 |
tgcatcaacatcgctagttcctctaattttctctaggagcttccttcctttttcttgtgatcctcgctgtattaagctgtttg |
394 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41414703 |
tgcatcaacatcgctagttcctctaattttctctaggagctttcttcctttttcttgtgatcctcgctgtattaagctgtttg |
41414785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 12 - 392
Target Start/End: Original strand, 36294035 - 36294415
Alignment:
| Q |
12 |
actgaaaagaagaattctccttcctagcttatcaactgttgcaatggaaataaatgttgagcaagcaagaacgccacccgtcaaagccgaggagtagagt |
111 |
Q |
| |
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||||| |||||||| ||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
36294035 |
actgataagaagaactctccttcccagcttatcaactgttgcgatggaaatgaatgttgagcaagcaagaacgccaccagttaaagccgaggagtagagt |
36294134 |
T |
|
| Q |
112 |
gaagcgtctcccccaaagcccatgctttgaaacagtactggagcatagaagagaatggcatttatgccagttaagatttgtgaagttggcatgacaattg |
211 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||||| || ||||||||||||||||||| ||| |||||||| ||||| |||||||||||||||||||||| |
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| T |
36294135 |
gaagcatctccaccaaatcccatgctttgaaacagcaccggagcatagaagagaatggaattaatgccagtcaagatctgtgaagttggcatgacaattg |
36294234 |
T |
|
| Q |
212 |
ccatcaccaactctggcctatactttcttttgagtatgttacgaaatgggtgctttattgagttcgccaattcgcttgcttcaaccatatcttcaaactc |
311 |
Q |
| |
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||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||| | |||||| |||||||||||||||||||| |
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| T |
36294235 |
ccatcaccaactctggcctataccttctttgaagtatgttacgaaacgggtgctttattgagtttgccaacttgcttgcatcaaccatatcttcaaactc |
36294334 |
T |
|
| Q |
312 |
tgcatcaacatcgctagttcctctaattttctctaggagcttccttcctttttcttgtgatcctcgctgtattaagctgtt |
392 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | ||||||| | |||||||||||| |
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| T |
36294335 |
tgcatcaacatcgccagttcctctaattttctctaggagcttccttcctctttcttctaatcctcgttctattaagctgtt |
36294415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 78 - 394
Target Start/End: Complemental strand, 7720 - 7404
Alignment:
| Q |
78 |
aagaacgccacccgtcaaagccgaggagtagagtgaagcgtctcccccaaagcccatgctttgaaacagtactggagcatagaagagaatggcatttatg |
177 |
Q |
| |
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|||||| || || ||||| |||||||||||||| || |||||| ||||| |||||||||||||| || || |||||||| |||||||| | ||||||| |
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| T |
7720 |
aagaactcccccagtcaaggccgaggagtagagagacgcgtctttgccaaatcccatgctttgaaatagcacgggagcataaaagagaattgaatttatg |
7621 |
T |
|
| Q |
178 |
ccagttaagatttgtgaagttggcatgacaattgccatcaccaactctggcctatactttcttttgagtatgttacgaaatgggtgctttattgagttcg |
277 |
Q |
| |
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|| || | || || | | ||||||| || ||||| |||| ||||||||| || | ||| |||||||| || || ||||||||||||||||| | |
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| T |
7620 |
ccggtaagaatctggaacgctggcatgcatatagccatgaccagctctggcctgtatcgtttttcaagtatgttccggaaagggtgctttattgagtttg |
7521 |
T |
|
| Q |
278 |
ccaattcgcttgcttcaaccatatcttcaaactctgcatcaacatcgctagttcctctaattttctctaggagcttccttcctttttcttgtgatcctcg |
377 |
Q |
| |
|
|||| || ||||||||||||||||||| ||||| ||||||||||| | |||||||| | ||| || |||| ||||||||||||||| | ||||||||| |
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| T |
7520 |
ccaactcacttgcttcaaccatatcttggaactcagcatcaacatcctttgttcctctgagtttttcaaggaccttccttcctttttcctttgatcctcg |
7421 |
T |
|
| Q |
378 |
ctgtattaagctgtttg |
394 |
Q |
| |
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| ||||||||| |||| |
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| T |
7420 |
ttctattaagctatttg |
7404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 394
Target Start/End: Complemental strand, 19972 - 19619
Alignment:
| Q |
41 |
tatcaactgttgcaatggaaataaatgttgagcaagcaagaacgccacccgtcaaagccgaggagtagagtgaagcgtctcccccaaagcccatgctttg |
140 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||| | ||||||||| | || ||||| || ||||||||||| || || | || ||||| ||||||||||| |
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|
| T |
19972 |
tatctactgttgcaatagaaatgaatgttgatccagcaagaactactccagtcaatgctgaggagtagagagatgcctgtctgccaaatcccatgctttg |
19873 |
T |
|
| Q |
141 |
aaacagtactggagcatagaagagaatggcatttatgccagttaagatttgtgaagttggcatgacaattgccatcaccaactctggcctatactttctt |
240 |
Q |
| |
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||| || | ||||||||| ||||| || | |||||||| || | || || | | |||||| || ||||| ||||||||||| || || ||||| |
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| T |
19872 |
aaatagcattggagcataaaagaggattgagtttatgccggtcagaatctggaatgcaggcatgcagatagccatgaccaactctggtctgtatcttctt |
19773 |
T |
|
| Q |
241 |
ttgagtatgttacgaaatgggtgctttattgagttcgccaattcgcttgcttcaaccatatcttcaaactctgcatcaacatcgctagttcctctaattt |
340 |
Q |
| |
|
|| || |||||| | | |||||||||||||| || |||||||| | || |||| |||||||| ||||| || || || || | |||||||| |||| |
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|
| T |
19772 |
ttaaggatgttataataggggtgctttattgaatttgccaattcacccgcatcaagcatatcttggaactccgcgtcgacctcattcgttcctctgattt |
19673 |
T |
|
| Q |
341 |
tctctaggagcttccttcctttttcttgtgatcctcgctgtattaagctgtttg |
394 |
Q |
| |
|
| || ||||||||||| |||| ||| | |||||||| | ||||||||| |||| |
|
|
| T |
19672 |
tttcaaggagcttcctcccttgttcctttgatcctctttctattaagctatttg |
19619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 41 - 394
Target Start/End: Complemental strand, 48332450 - 48332097
Alignment:
| Q |
41 |
tatcaactgttgcaatggaaataaatgttgagcaagcaagaacgccacccgtcaaagccgaggagtagagtgaagcgtctcccccaaagcccatgctttg |
140 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||| | ||||||||| | || ||||| || ||||||||||| || || | || ||||| ||||||||||| |
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| T |
48332450 |
tatctactgttgcaatagaaatgaatgttgatccagcaagaactactccagtcaatgctgaggagtagagagatgcctgtctgccaaatcccatgctttg |
48332351 |
T |
|
| Q |
141 |
aaacagtactggagcatagaagagaatggcatttatgccagttaagatttgtgaagttggcatgacaattgccatcaccaactctggcctatactttctt |
240 |
Q |
| |
|
||| || | ||||||||| ||||| || | |||||||| || | || || | | |||||| || ||||| ||||||||||| || || ||||| |
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|
| T |
48332350 |
aaatagcattggagcataaaagaggattgagtttatgccggtcagaatctggaatgcaggcatgcagatagccatgaccaactctggtctgtatcttctt |
48332251 |
T |
|
| Q |
241 |
ttgagtatgttacgaaatgggtgctttattgagttcgccaattcgcttgcttcaaccatatcttcaaactctgcatcaacatcgctagttcctctaattt |
340 |
Q |
| |
|
|| || |||||| | | |||||||||||||| || |||||||| | || |||| |||||||| ||||| || || || || | |||||||| |||| |
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|
| T |
48332250 |
ttaaggatgttataataggggtgctttattgaatttgccaattcacccgcatcaagcatatcttggaactccgcgtcgacctcattcgttcctctgattt |
48332151 |
T |
|
| Q |
341 |
tctctaggagcttccttcctttttcttgtgatcctcgctgtattaagctgtttg |
394 |
Q |
| |
|
| || ||||||||||| |||| ||| | |||||||| | ||||||||| |||| |
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|
| T |
48332150 |
tttcaaggagcttcctcccttgttcctttgatcctctttctattaagctatttg |
48332097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 167
Target Start/End: Complemental strand, 48344468 - 48344342
Alignment:
| Q |
41 |
tatcaactgttgcaatggaaataaatgttgagcaagcaagaacgccacccgtcaaagccgaggagtagagtgaagcgtctcccccaaagcccatgctttg |
140 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||| | |||||||| | || ||||| || |||||||| || || || | || ||||| ||||||||||| |
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|
| T |
48344468 |
tatctactgttgcaatagaaatgaatgttgataaggcaagaactactccagtcaaggctgaggagtaaagcgatgcttgtctgccaaatcccatgctttg |
48344369 |
T |
|
| Q |
141 |
aaacagtactggagcatagaagagaat |
167 |
Q |
| |
|
||| || | ||||||||| |||||||| |
|
|
| T |
48344368 |
aaatagcattggagcataaaagagaat |
48344342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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