View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15428_low_19 (Length: 386)
Name: NF15428_low_19
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15428_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 43401815 - 43401747
Alignment:
| Q |
16 |
aattacaaggtgccgtatatatgcggaacacccacccacacatacaacccgaatatatgaggaacctac |
84 |
Q |
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| T |
43401815 |
aattacaaggtgccgtatatatgcggaacacccacccacagatacaacccgaatatatgaggaacctac |
43401747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 29677212 - 29677240
Alignment:
| Q |
19 |
tacaaggtgccgtatatatgcggaacacc |
47 |
Q |
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| T |
29677212 |
tacaaggtgccgtatatatgcggaacacc |
29677240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 217 - 370
Target Start/End: Complemental strand, 34036466 - 34036322
Alignment:
| Q |
217 |
tacattagccgcaatttacgttgtagtgatcgcaaatagtcgcaatcacagaaaactcagtcagtagccgcaatcacaatttttaaccatacataagtca |
316 |
Q |
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| T |
34036466 |
tacattaatcgcaatctatgtcgtagtgatcgcaaatagcggtaatcacagaaaactcagtcggtagctgcaatcacaat------ccatacataagt-- |
34036375 |
T |
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| Q |
317 |
acaacgaagaaaagtacaaaaattggttattcatgatcatgttagagtaatatc |
370 |
Q |
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| T |
34036374 |
-caacgaagaaaagtactaaaattggttattcatgatcttgctagagcaatatc |
34036322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 5757150 - 5757117
Alignment:
| Q |
14 |
ataattacaaggtgccgtatatatgcggaacacc |
47 |
Q |
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| T |
5757150 |
ataaatacaaggtgccgtatatatgcggaacacc |
5757117 |
T |
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