View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15428_low_20 (Length: 360)

Name: NF15428_low_20
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15428_low_20
NF15428_low_20
[»] chr7 (6 HSPs)
chr7 (253-328)||(38553819-38553894)
chr7 (257-328)||(23069842-23069913)
chr7 (258-328)||(31525364-31525434)
chr7 (257-323)||(46987091-46987157)
chr7 (253-330)||(7872731-7872808)
chr7 (276-328)||(32896449-32896501)
[»] chr6 (9 HSPs)
chr6 (253-328)||(15062292-15062367)
chr6 (257-330)||(28592670-28592743)
chr6 (276-328)||(9333965-9334017)
chr6 (258-328)||(9923246-9923316)
chr6 (257-328)||(4450267-4450338)
chr6 (253-328)||(4826291-4826366)
chr6 (258-328)||(15169937-15170007)
chr6 (258-328)||(15178709-15178779)
chr6 (255-328)||(12276216-12276289)
[»] chr8 (3 HSPs)
chr8 (253-328)||(1244690-1244765)
chr8 (260-328)||(5179801-5179869)
chr8 (276-328)||(44632170-44632222)
[»] chr2 (8 HSPs)
chr2 (253-328)||(30243251-30243326)
chr2 (253-328)||(30045454-30045529)
chr2 (253-328)||(30050617-30050692)
chr2 (253-328)||(30141661-30141736)
chr2 (257-328)||(20120706-20120777)
chr2 (253-328)||(30089050-30089125)
chr2 (253-328)||(30125654-30125729)
chr2 (258-328)||(12124551-12124621)
[»] chr5 (7 HSPs)
chr5 (257-328)||(3955551-3955622)
chr5 (257-328)||(17338688-17338759)
chr5 (258-328)||(28604403-28604473)
chr5 (257-328)||(27679503-27679574)
chr5 (257-328)||(35109405-35109476)
chr5 (294-328)||(6894138-6894172)
chr5 (262-314)||(4763185-4763237)
[»] chr3 (10 HSPs)
chr3 (276-328)||(1743975-1744027)
chr3 (245-328)||(13042785-13042868)
chr3 (245-328)||(13050862-13050945)
chr3 (257-328)||(35863798-35863869)
chr3 (253-328)||(38869503-38869578)
chr3 (257-328)||(52119381-52119452)
chr3 (247-324)||(22843459-22843536)
chr3 (242-323)||(23147968-23148049)
chr3 (253-322)||(28595790-28595858)
chr3 (253-312)||(52454978-52455038)
[»] chr1 (13 HSPs)
chr1 (276-320)||(10618163-10618207)
chr1 (276-328)||(41884790-41884842)
chr1 (253-328)||(8269353-8269428)
chr1 (257-328)||(9639802-9639873)
chr1 (253-328)||(10132429-10132504)
chr1 (257-312)||(21015967-21016022)
chr1 (257-328)||(35473957-35474028)
chr1 (255-328)||(23171282-23171355)
chr1 (260-328)||(3136673-3136741)
chr1 (258-330)||(9413804-9413876)
chr1 (276-328)||(11913754-11913806)
chr1 (288-328)||(32433080-32433120)
chr1 (257-328)||(39392914-39392986)
[»] chr4 (5 HSPs)
chr4 (257-328)||(7230285-7230356)
chr4 (257-328)||(19854570-19854641)
chr4 (258-328)||(36071150-36071220)
chr4 (267-328)||(15988432-15988493)
chr4 (257-310)||(21266885-21266938)


Alignment Details
Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 38553819 - 38553894
Alignment:
Q  253 tgaacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||||||| |||||||  ||||| |||| ||||| ||||||| ||||||||||||||||||| ||||||||    
T  38553819 tgaacttagctcagttggtaagaacaatgcataatatatgtaaggtttggggttcgaacctcggacatcacaaaaa 38553894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 23069913 - 23069842
Alignment:
Q  257 cttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||| |||||||| |||| ||||| |||||  |||||  |||||||||||| |||||||||| ||||    
T  23069913 cttagctcagttggtaaagacaacacataatatatgcaaggtatggggttcgaaccccggacaccaccaaaa 23069842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 31525434 - 31525364
Alignment:
Q  258 ttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    |||| ||||||||||   |||||| ||| |||||| |||||||| |||||||||||||| ||||| |||||    
T  31525434 ttagttcaattggtatgaacaatatataatatatacaaggttcgaggttcgaacctcggccaccaaaaaaa 31525364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 323
Target Start/End: Original strand, 46987091 - 46987157
Alignment:
Q  257 cttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccac 323  Q
    ||||||||| |||||||  ||||| |||| |||||  ||||| ||||||||||||| ||||||||||    
T  46987091 cttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcgaaccccggacaccac 46987157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 330
Target Start/End: Complemental strand, 7872808 - 7872731
Alignment:
Q  253 tgaacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaaca 330  Q
    ||||||||||||| |||||||  ||||| |||| |||||  |||||  ||||||||||||  ||||||||| ||||||    
T  7872808 tgaacttagctcagttggtaaggacaatgcataatatatgcaaggtctggggttcgaacccaggacaccaccaaaaca 7872731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 32896501 - 32896449
Alignment:
Q  276 acaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||| |||| |||||| ||| || |||||||||||||| |||||||||||||    
T  32896501 acaatgcataatatatacaagatttggggttcgaacctcagacaccacaaaaa 32896449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 15062292 - 15062367
Alignment:
Q  253 tgaacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||| ||| ||||||| |||||| ||||  |||| |||||||||||||||||||| |||||||||||||||    
T  15062292 tgaacttagttcagttggtaagtacaatgcataaaatatgtaaggttcggggttcgaaccgcggacaccacaaaaa 15062367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 257 - 330
Target Start/End: Complemental strand, 28592743 - 28592670
Alignment:
Q  257 cttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaaca 330  Q
    ||||| |||||||| ||| ||||| |||| ||||| ||||||  ||||||||||||||||||||||||||||||    
T  28592743 cttagttcaattggcaaagacaatgcataatatatgtaaggtctggggttcgaacctcggacaccacaaaaaca 28592670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 9334017 - 9333965
Alignment:
Q  276 acaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||| |||| ||||| ||||||| ||||||||||||||||||||||||||||    
T  9334017 acaatgcataatatatgtaaggtttggggttcgaacctcggacaccacaaaaa 9333965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 9923246 - 9923316
Alignment:
Q  258 ttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    |||||||||||| |||  ||||| |||| |||||| |||||||||| ||| ||||| ||||||||||||||    
T  9923246 ttagctcaattgataaggacaatgcataatatatacaaggttcgggattcaaaccttggacaccacaaaaa 9923316  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 4450267 - 4450338
Alignment:
Q  257 cttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||| ||| |||| ||||| |||| |||||  ||||| ||||||||||| ||||| |||||||||||    
T  4450267 cttagctcagttgataaagacaatgcataatatatgcaaggtccggggttcgaatctcggtcaccacaaaaa 4450338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 4826291 - 4826366
Alignment:
Q  253 tgaacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||| |||||||||| | ||||| |||| ||||| ||||||||| ||||| |||  ||| |||||||||||    
T  4826291 tgaacttagttcaattggtagagacaatgcataatatatgtaaggttcgaggttcaaactccggccaccacaaaaa 4826366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 15169937 - 15170007
Alignment:
Q  258 ttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||  |||||| |||||| |||| ||||| ||||||||||||||| |||| ||  |||||||||||    
T  15169937 ttagctcagctggtaagtacaatgcataatatatgtaaggttcggggttcaaaccccgaccaccacaaaaa 15170007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 15178709 - 15178779
Alignment:
Q  258 ttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||  |||||| |||||| |||| ||||| ||||||||||||||| |||| ||  |||||||||||    
T  15178709 ttagctcagctggtaagtacaatgcataatatatgtaaggttcggggttcaaaccccgaccaccacaaaaa 15178779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 328
Target Start/End: Complemental strand, 12276289 - 12276216
Alignment:
Q  255 aacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||||| |||||||  ||||| |||| |||||  || ||||||| |||||| ||||||||||| |||||    
T  12276289 aacttagctcagttggtaagaacaatgcataatatatgcaaagttcgggattcgaatctcggacaccaaaaaaa 12276216  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 328
Target Start/End: Complemental strand, 1244765 - 1244690
Alignment:
Q  253 tgaacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||||||| |||||||  ||||| |||| |||||| |||||  |||||||||||| |||||||||||||||    
T  1244765 tgaacttagctcagttggtaaggacaatgcataatatatacaaggtctggggttcgaaccccggacaccacaaaaa 1244690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 328
Target Start/End: Original strand, 5179801 - 5179869
Alignment:
Q  260 agctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    |||||| |||||||  ||||| |||| |||||| |||||||||||||| ||| |||| |||||||||||    
T  5179801 agctcagttggtaaggacaatgcataatatatacaaggttcggggttcaaacttcggccaccacaaaaa 5179869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 44632222 - 44632170
Alignment:
Q  276 acaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||| |||| ||||||||||||||||||||| |||| ||  |||||||||||    
T  44632222 acaatgcataatatatataaggttcggggttcaaaccccgaccaccacaaaaa 44632170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 30243251 - 30243326
Alignment:
Q  253 tgaacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||||||| |||||| | ||||| |||| |||||| |||||||||||||| |||||||| |||||| ||||    
T  30243251 tgaacttagctcagttggtagagacaatgcataatatatacaaggttcggggttcaaacctcggccaccaccaaaa 30243326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 30045454 - 30045529
Alignment:
Q  253 tgaacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||||||||||||||   ||||| |||| |||||| |||||||| | ||| |||||||| |||||||||||    
T  30045454 tgaacttagctcaattggtagggacaatgcataatatatacaaggttcgagattcaaacctcggccaccacaaaaa 30045529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 30050617 - 30050692
Alignment:
Q  253 tgaacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||||||||||||||   ||||| |||| |||||| |||||||| | ||| |||||||| |||||||||||    
T  30050617 tgaacttagctcaattggtagggacaatgcataatatatacaaggttcgagattcaaacctcggccaccacaaaaa 30050692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 30141661 - 30141736
Alignment:
Q  253 tgaacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||||||||||||||   ||||| |||| |||||| |||||||| | ||| |||||||| |||||||||||    
T  30141661 tgaacttagctcaattggtagggacaatgcataatatatacaaggttcgagattcaaacctcggccaccacaaaaa 30141736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 20120777 - 20120706
Alignment:
Q  257 cttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||| |||||||  ||||| |||| |||||  |||||||||||||| || | |||||||||||||||    
T  20120777 cttagctcagttggtaaggacaatgcataatatatgcaaggttcggggttcaaatcccggacaccacaaaaa 20120706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 30089050 - 30089125
Alignment:
Q  253 tgaacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||||||| ||||||   ||||| |||| |||||| ||||| |||||||| |||||||| ||||| |||||    
T  30089050 tgaacttagctcagttggtagggacaatgcataatatatacaaggtccggggttcaaacctcggccaccataaaaa 30089125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 30125654 - 30125729
Alignment:
Q  253 tgaacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||||||| ||||||   ||||| |||| |||||| ||||| |||||||| |||||||| ||||| |||||    
T  30125654 tgaacttagctcagttggtagggacaatgcataatatatacaaggtccggggttcaaacctcggccaccataaaaa 30125729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 12124551 - 12124621
Alignment:
Q  258 ttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    |||||||| |||||||  ||||| |||| |||||  ||||| |||||||||||||||  ||||||||||||    
T  12124551 ttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcgaacctcaaacaccacaaaaa 12124621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 3955551 - 3955622
Alignment:
Q  257 cttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||| |||||||||||| ||||| |||| ||||| ||| |||||||||||||| | | |||||||||||||    
T  3955551 cttagttcaattggtaaagacaatgcataatatatgtaatgttcggggttcgaatcccagacaccacaaaaa 3955622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 17338759 - 17338688
Alignment:
Q  257 cttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    |||||||||||||||||| |||||||||| |||||  |||||  |  ||||||||| |||||||||||||||    
T  17338759 cttagctcaattggtaaagacaatacataatatatgcaaggtgtgtcgttcgaaccccggacaccacaaaaa 17338688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 28604473 - 28604403
Alignment:
Q  258 ttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    |||||||| |||||||| ||||| |||| || || |||||| ||||||||||| | |||||||||||||||    
T  28604473 ttagctcagttggtaaagacaatgcataataaatgtaaggtccggggttcgaatcacggacaccacaaaaa 28604403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 27679503 - 27679574
Alignment:
Q  257 cttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||| |||||||| | ||| |||| |||||  |||||||||||||| || | |||||||||||||||    
T  27679503 cttagctcagttggtaaagataatgcataatatatgcaaggttcggggttcaaatcccggacaccacaaaaa 27679574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 35109405 - 35109476
Alignment:
Q  257 cttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    |||| |||| |||||||| |||||||||| |||||  ||||| || |||||||| | |||||||||||||||    
T  35109405 cttaactcagttggtaaagacaatacataatatatgcaaggtccgaggttcgaatcccggacaccacaaaaa 35109476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 328
Target Start/End: Original strand, 6894138 - 6894172
Alignment:
Q  294 aaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||||||||||||||||| |||||||||||    
T  6894138 aaggttcggggttcgaacctcggccaccacaaaaa 6894172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 314
Target Start/End: Complemental strand, 4763237 - 4763185
Alignment:
Q  262 ctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctc 314  Q
    ||||||||||||| ||||| |||| ||||| |||||| |||||||| ||||||    
T  4763237 ctcaattggtaaagacaatgcataatatatgtaaggtccggggttcaaacctc 4763185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 1744027 - 1743975
Alignment:
Q  276 acaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    |||||||||| |||||  |||||||||||||||||| |||| |||||||||||    
T  1744027 acaatacataatatatgcaaggttcggggttcgaacttcggccaccacaaaaa 1743975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 13042868 - 13042785
Alignment:
Q  245 agtccatctgaacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||| ||| ||||||||| |||||||| |||||  ||| |||||  ||||| ||||||||||||| |  ||||||||||||    
T  13042868 agtccatgtgagcttagctcagttggtaaagacaatttataatatatgcaaggtccggggttcgaaccccaaacaccacaaaaa 13042785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 13050945 - 13050862
Alignment:
Q  245 agtccatctgaacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||| ||| ||||||||| |||||||| |||||  ||| |||||  ||||| ||||||||||||| |  ||||||||||||    
T  13050945 agtccatgtgagcttagctcagttggtaaagacaatttataatatatgcaaggtccggggttcgaaccccaaacaccacaaaaa 13050862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 35863869 - 35863798
Alignment:
Q  257 cttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||| |||||||  |||||||||| |||||  |||||  ||||||| |||||||| |||||||||||    
T  35863869 cttagctcagttggtaaggacaatacataatatatgcaaggtctggggttcaaacctcggccaccacaaaaa 35863798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 328
Target Start/End: Complemental strand, 38869578 - 38869503
Alignment:
Q  253 tgaacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||||||| |||||||  ||||| |||| |||||| ||| | || |||||||| |||| ||||||||||||    
T  38869578 tgaacttagctcagttggtaagaacaatgcataatatatacaagatccgaggttcgaaactcgaacaccacaaaaa 38869503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 52119381 - 52119452
Alignment:
Q  257 cttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||| |||||||  ||||| |||| |||||  ||||||||||||||||||| ||| ||||| |||||    
T  52119381 cttagctcagttggtaaggacaatgcataatatatgcaaggttcggggttcgaaccccggccaccataaaaa 52119452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 324
Target Start/End: Original strand, 22843459 - 22843536
Alignment:
Q  247 tccatctgaacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccaca 324  Q
    ||||| ||| ||||||||| || ||||| ||||| |||| ||||| ||||||||||||||  |||| | |||||||||    
T  22843459 tccatgtgagcttagctcagttagtaaagacaatgcataatatatgtaaggttcggggttgaaaccccagacaccaca 22843536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 323
Target Start/End: Complemental strand, 23148049 - 23147968
Alignment:
Q  242 ataagtccatctgaacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccac 323  Q
    |||||||| | ||| ||||||||| |||||||  |||||||||| |||||   |||| ||||||||||||| || |||||||    
T  23148049 ataagtccctgtgagcttagctcagttggtaaggacaatacataatatatgcgaggtccggggttcgaaccccgaacaccac 23147968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 28595790 - 28595858
Alignment:
Q  253 tgaacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacacca 322  Q
    |||||||| ||||||||||||| ||||| |||| |||||| || |||| |||||||||||  ||||||||    
T  28595790 tgaacttaactcaattggtaaagacaatgcataatatatacaaagttc-gggttcgaaccatggacacca 28595858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 52455038 - 52454978
Alignment:
Q  253 tgaacttagctcaattggtaa-atacaatacatactatatataaggttcggggttcgaacc 312  Q
    ||||||||||||||||||||| | | ||| |||| |||||| |||||||||||||| ||||    
T  52455038 tgaacttagctcaattggtaagaaaaaatgcataatatatacaaggttcggggttcaaacc 52454978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 320
Target Start/End: Complemental strand, 10618207 - 10618163
Alignment:
Q  276 acaatacatactatatataaggttcggggttcgaacctcggacac 320  Q
    |||||||||| |||||||||||||||||||||||| | |||||||    
T  10618207 acaatacataatatatataaggttcggggttcgaatcccggacac 10618163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 41884842 - 41884790
Alignment:
Q  276 acaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    |||||||||| |||||| ||||| ||||||||||||| ||| |||||||||||    
T  41884842 acaatacataatatatacaaggtccggggttcgaaccccggccaccacaaaaa 41884790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 328
Target Start/End: Complemental strand, 8269428 - 8269353
Alignment:
Q  253 tgaacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||||||| |||||||  |||||||||| |||||  ||||| |||||||| |||| ||  |||||||||||    
T  8269428 tgaacttagctcagttggtaaggacaatacataatatatgcaaggtccggggttcaaaccccgaccaccacaaaaa 8269353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 328
Target Start/End: Complemental strand, 9639873 - 9639802
Alignment:
Q  257 cttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    |||| |||| |||||||  ||||| |||| |||||  ||||| ||| |||||||||||||||||||||||||    
T  9639873 cttaactcacttggtaaggacaatgcataatatatgcaaggtccggagttcgaacctcggacaccacaaaaa 9639802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 253 - 328
Target Start/End: Complemental strand, 10132504 - 10132429
Alignment:
Q  253 tgaacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||| ||| |||||||  ||||| |||| |||||  |||||  ||||||||||||| ||||||||||||||    
T  10132504 tgaacttagatcagttggtaaggacaatgcataatatatgcaaggtctggggttcgaaccttggacaccacaaaaa 10132429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 312
Target Start/End: Original strand, 21015967 - 21016022
Alignment:
Q  257 cttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacc 312  Q
    ||||||||| |||||||  ||||| |||| ||||| ||||||||||||||||||||    
T  21015967 cttagctcagttggtaagaacaatgcataatatatgtaaggttcggggttcgaacc 21016022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 35473957 - 35474028
Alignment:
Q  257 cttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    |||||||||||||||||  | ||| |||| |||||  ||||||| ||||||||||| |||||||||| ||||    
T  35473957 cttagctcaattggtaaggataatgcataatatatgcaaggttcagggttcgaaccccggacaccaccaaaa 35474028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 328
Target Start/End: Complemental strand, 23171355 - 23171282
Alignment:
Q  255 aacttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||||| |||||||| ||||| |||| |||||  ||| | ||||||| ||| ||| |||||||||||||    
T  23171355 aacttagctcagttggtaaaaacaatgcatagtatatgcaagatccggggtttgaatctcagacaccacaaaaa 23171282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 328
Target Start/End: Complemental strand, 3136741 - 3136673
Alignment:
Q  260 agctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||||||||| ||||| |||| ||||| ||||||   |||||||||   |||||||||||||||    
T  3136741 agctcaattggtaaagacaatgcataatatatgtaaggtctagggttcgaattccggacaccacaaaaa 3136673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 330
Target Start/End: Original strand, 9413804 - 9413876
Alignment:
Q  258 ttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaaca 330  Q
    |||| ||| |||||||  ||||| |||| ||||| |||||||||||||||||| | ||||| |||| ||||||    
T  9413804 ttagttcagttggtaagaacaatgcataatatatgtaaggttcggggttcgaatcccggacgccaccaaaaca 9413876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 328
Target Start/End: Original strand, 11913754 - 11913806
Alignment:
Q  276 acaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||| |||| |||||| |||||||||| ||| |||||||| |||||||||||    
T  11913754 acaatgcataatatatacaaggttcgggattcaaacctcggtcaccacaaaaa 11913806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 328
Target Start/End: Complemental strand, 32433120 - 32433080
Alignment:
Q  288 atatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||||||||||||||||||| ||  |||||||||||    
T  32433120 atatataaggttcggggttcgaaccccgaccaccacaaaaa 32433080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 39392914 - 39392986
Alignment:
Q  257 cttagctcaattggtaaatacaatacatacta-tatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    |||| |||| |||||||| |||||||| | || ||| ||||||||||||||| |||| ||| |||||||||||    
T  39392914 cttaactcagttggtaaaaacaatacaaaataatatgtaaggttcggggttcaaaccccggccaccacaaaaa 39392986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 7230285 - 7230356
Alignment:
Q  257 cttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||| |||||||  ||||| |||| |||||  ||||| |||||||| |||||||| |||||||||||    
T  7230285 cttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcaaacctcggccaccacaaaaa 7230356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 19854570 - 19854641
Alignment:
Q  257 cttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    ||||||||| ||||||   ||||| |||| |||||  ||| | |||||||||||||||||||||||||||||    
T  19854570 cttagctcagttggtatggacaatgcataatatatgcaagatccggggttcgaacctcggacaccacaaaaa 19854641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 328
Target Start/End: Original strand, 36071150 - 36071220
Alignment:
Q  258 ttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    |||| ||| |||||||  ||||| |||| ||||| |||||||||||||||||||  ||| |||||||||||    
T  36071150 ttaggtcagttggtaaggacaatgcataatatatgtaaggttcggggttcgaacgccgggcaccacaaaaa 36071220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 15988432 - 15988493
Alignment:
Q  267 ttggtaaatacaatacatactatatataaggttcggggttcgaacctcggacaccacaaaaa 328  Q
    |||||||  ||||| ||||||||||| ||||| ||||||||||||||||  |||||| ||||    
T  15988432 ttggtaaggacaatgcatactatatacaaggtccggggttcgaacctcgaccaccaccaaaa 15988493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 21266938 - 21266885
Alignment:
Q  257 cttagctcaattggtaaatacaatacatactatatataaggttcggggttcgaa 310  Q
    ||||||||||||| |||| ||||| |||| ||||| ||||||| ||||||||||    
T  21266938 cttagctcaattgttaaagacaatgcataatatatgtaaggtttggggttcgaa 21266885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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