View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15428_low_21 (Length: 338)
Name: NF15428_low_21
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15428_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 13511025 - 13510757
Alignment:
| Q |
19 |
taactgatgccctcaatcaagcaaataacctnnnnnnnttactacatcccatttgtagaatattactaaattgaagcgacatagtgaagcggcagcctgc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| |
|
|
| T |
13511025 |
taactgatgccctcaatcaagcaaataacctaaaaaaattactacatcccatttgtagaatattgctaaattgaagcgacaaagtgaagcggcagtctgc |
13510926 |
T |
|
| Q |
119 |
ttcaatgtcaacgcaagcgatgacagtggcggcgagggttccaccaacatggttgtatatatgtcttgctctttcttcaattttttcacacttattgcgg |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13510925 |
ttcaatgtcaacgcaagtgatgacagtggcggtgagggttccaccaacatggttgtatatatgtcttgc----tcttcaattttttcacacttattgcgg |
13510830 |
T |
|
| Q |
219 |
taatcacnnnnnnncctgctcatttcttcatccttttcttcttcttaattgtgtgttatgcagtggaggagttgca |
294 |
Q |
| |
|
||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13510829 |
taatcactttttt---ttcctatttcttcatccttttcttcttcttaattgtgtgttatgcagtggaggagttgca |
13510757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 19 - 294
Target Start/End: Complemental strand, 13600556 - 13600288
Alignment:
| Q |
19 |
taactgatgccctcaatcaagcaaataacctnnnnnnnttactacatcccatttgtagaatattactaaattgaagcgacatagtgaagcggcagcctgc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| |
|
|
| T |
13600556 |
taactgatgccctcaatcaagcaaataacctaaaaaaattactacatcccatttgtagaatattgctaaattgaagcgacaaagtgaagcggcagtctgc |
13600457 |
T |
|
| Q |
119 |
ttcaatgtcaacgcaagcgatgacagtggcggcgagggttccaccaacatggttgtatatatgtcttgctctttcttcaattttttcacacttattgcgg |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
13600456 |
ttcaatgtcaacgcaagtgatgacagtggcggtgagggttccaccaacatggttgtatatatgtcttgc----tcttcaattttttcacacttattgcgg |
13600361 |
T |
|
| Q |
219 |
taatcacnnnnnnncctgctcatttcttcatccttttcttcttcttaattgtgtgttatgcagtggaggagttgca |
294 |
Q |
| |
|
||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13600360 |
taatcactttttt---ttcctatttcttcatccttttcttcttcttaattgtgtgttatgcagtggaggagttgca |
13600288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 13509460 - 13509412
Alignment:
| Q |
290 |
ttgcacaagcagtattgttatatagagatgttgaactctaccaccatgt |
338 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13509460 |
ttgcacaagcagtattgttatatagaaatgttgaactctaccaccatgt |
13509412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 13598990 - 13598942
Alignment:
| Q |
290 |
ttgcacaagcagtattgttatatagagatgttgaactctaccaccatgt |
338 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13598990 |
ttgcacaagcagtattgttatatagaaatgttgaactctaccaccatgt |
13598942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 17585476 - 17585551
Alignment:
| Q |
19 |
taactgatgccctcaatcaagcaaataacctnnnnnnnttactacatcccatttgtagaatattactaaattgaag |
94 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| |||||||||| ||||||||| |||||||||| |
|
|
| T |
17585476 |
taactgatgccctcaatcaagaaaataacctacaaacattaccacatcccattcatagaatattgttaaattgaag |
17585551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University