View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15428_low_23 (Length: 289)
Name: NF15428_low_23
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15428_low_23 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 3e-82; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 67 - 289
Target Start/End: Complemental strand, 10566416 - 10566194
Alignment:
| Q |
67 |
tatggacaggttatagcaggtaaactaatgaggtccaccaatggtcctttaaaattaaggtccatattagaggcttcctaaatataaatttatttgtaaa |
166 |
Q |
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| T |
10566416 |
tatggacaagttatagcaggtaaattaatgagatccaccaataatcccttaaaattaaggttcatattagagggtccctaaatataaatctctttgtaaa |
10566317 |
T |
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| Q |
167 |
cgttccttaaactctaaatatatcttaccttgagcgagacaccatcccaccctaaatttccatcataaaagtaaaagaaatattgaaaatttgaagagag |
266 |
Q |
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| T |
10566316 |
tatttcttaaactctaaatatatcttatcttgagccagacaccatcgcaccctaaatttccatcataaaagtaaaagaaatattgaaaatttgaagagag |
10566217 |
T |
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| Q |
267 |
ttttatgaaataagagagtaaaa |
289 |
Q |
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| T |
10566216 |
ttttatgaaataagagagtaaaa |
10566194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 10567046 - 10567094
Alignment:
| Q |
87 |
taaactaatgaggtccaccaatggtcctttaaaattaaggtccatatta |
135 |
Q |
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| T |
10567046 |
taaactaatgaggtccaccaatgatcccttaaaattaaggtccatatta |
10567094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 10566477 - 10566436
Alignment:
| Q |
7 |
gagaagcagagggaagagacc-acaatggttcaatggttcac |
47 |
Q |
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| T |
10566477 |
gagaagaagagggaagagacccacaatggttcaatggttcac |
10566436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 45520862 - 45520793
Alignment:
| Q |
66 |
ctatggacaggttatagcaggtaaactaatgaggtccaccaatggtcctttaaaattaaggtccatatta |
135 |
Q |
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| T |
45520862 |
ctatcgacatgttatagcaggtaaactaatgaggttcatcaatggtcccttaaaattaaggtccatatta |
45520793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 45521716 - 45521769
Alignment:
| Q |
92 |
taatgaggtccaccaatggtcctttaaaattaaggtccatattagaggcttcct |
145 |
Q |
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| T |
45521716 |
taatgaggtccaccaatggtcccttaaaattaaggttcatattagggacttcct |
45521769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 45520922 - 45520881
Alignment:
| Q |
7 |
gagaagcagagggaagagacc-acaatggttcaatggttcac |
47 |
Q |
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| T |
45520922 |
gagaagaagagggaagagacccacaatggttcaatggttcac |
45520881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 52727696 - 52727637
Alignment:
| Q |
78 |
tatagcaggtaaactaatgaggtccaccaatggt-cctttaaaattaaggtccatattag |
136 |
Q |
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| T |
52727696 |
tatagtaggtaaactaatgaggtccaccaatggtacccataaaattaaggtccatattag |
52727637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 52728540 - 52728602
Alignment:
| Q |
79 |
atagcaggtaaactaatgaggtccaccaatggtcctttaaaattaaggtccatattagaggct |
141 |
Q |
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| T |
52728540 |
atagcaggttaactaatgaggtccataaatgatcctttaaaattaagatccatattaggggct |
52728602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 2431702 - 2431661
Alignment:
| Q |
95 |
tgaggtccaccaatggtcctttaaaattaaggtccatattag |
136 |
Q |
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| T |
2431702 |
tgaggtgcaccaatggtccttttaaattgaggtccatattag |
2431661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 2734136 - 2734095
Alignment:
| Q |
95 |
tgaggtccaccaatggtcctttaaaattaaggtccatattag |
136 |
Q |
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| T |
2734136 |
tgaggtgcaccaatggtccttttaaattgaggtccatattag |
2734095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 50551444 - 50551488
Alignment:
| Q |
95 |
tgaggtccaccaatggtcctttaaaattaaggtccatattagagg |
139 |
Q |
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| T |
50551444 |
tgaggtccaccgatgatccttttaaattaaggaccatattagagg |
50551488 |
T |
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