View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15428_low_26 (Length: 259)

Name: NF15428_low_26
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15428_low_26
NF15428_low_26
[»] chr7 (1 HSPs)
chr7 (11-257)||(3087119-3087366)
[»] chr6 (12 HSPs)
chr6 (14-215)||(4299050-4299251)
chr6 (15-211)||(4622843-4623039)
chr6 (14-215)||(4626653-4626854)
chr6 (143-211)||(4557956-4558024)
chr6 (14-64)||(4259534-4259584)
chr6 (25-211)||(4586349-4586535)
chr6 (159-205)||(4612957-4613003)
chr6 (24-80)||(4255985-4256041)
chr6 (14-51)||(4602494-4602531)
chr6 (26-85)||(3172455-3172514)
chr6 (154-211)||(4571814-4571871)
chr6 (153-205)||(4599011-4599063)
[»] chr8 (2 HSPs)
chr8 (143-211)||(16685519-16685587)
chr8 (25-117)||(20863170-20863262)
[»] chr5 (1 HSPs)
chr5 (14-73)||(24107077-24107136)
[»] scaffold0288 (1 HSPs)
scaffold0288 (21-85)||(3077-3141)
[»] scaffold0477 (2 HSPs)
scaffold0477 (162-203)||(3930-3971)
scaffold0477 (14-94)||(4039-4119)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 3087119 - 3087366
Alignment:
Q  11 cacagaatatagcgcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgaca 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3087119 cacagaatatagcgcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgaca 3087218  T
Q  111 aattctaaaatgggatcttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  3087219 aattctaaaatgggatcttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactctggcgt 3087318  T
Q  211 c-taaaatctcatctgcttgtcataattatagaagaagtcaatagctt 257  Q
    |  ||| |||||| ||||||||||||||||||||||||||||||||||    
T  3087319 cagaaactctcatatgcttgtcataattatagaagaagtcaatagctt 3087366  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 4299251 - 4299050
Alignment:
Q  14 agaatatagcgcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaat 113  Q
    |||||| || ||||||||||||||||||||||||||||||||||| ||||| | ||||||||| |||||||| || |||||  || |||||||| |||||    
T  4299251 agaatagagagcattcattacatcactctcaagttcatcataagtattaaaaacaatagcagatgctttgtgaaatctatctgccgcttcaatggcaaat 4299152  T
Q  114 tctaaaatgggatcttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtcta 213  Q
    ||||  |||  ||| ||| ||| |  |  |||||| | |||||  ||||| |||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  4299151 tctaccatgacatcatttggatttgtactccttataaagtcagttagatctttcaatcgaaagttctgcaatcctggaatacagtctagtttgatgtcta 4299052  T
Q  214 aa 215  Q
    ||    
T  4299051 aa 4299050  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 4622843 - 4623039
Alignment:
Q  15 gaatatagcgcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaatt 114  Q
    ||||| |||||||||||  ||||| |||||||||||| |||||| ||||| ||||||||||||| |||||| || |  ||  || ||||||||| |||||    
T  4622843 gaatagagcgcattcatcgcatcagtctcaagttcattataagtattaaaaataatagcagaggatttgtgaaatcgttctgccgcttcaatgagaaatt 4622942  T
Q  115 ctaaaatgggatcttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 211  Q
    |||  |||  ||| ||| | |||  || |||||| | |||||||| |||||| |  |||||||||| |||||| |||| ||||||||||| ||||||    
T  4622943 ctaccatgacatcatttggctctgtaatccttataaagtcaggcaaatcctttaaccgaaagttcttcaatccaggaacacagtctacttcggtgtc 4623039  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 215
Target Start/End: Original strand, 4626653 - 4626854
Alignment:
Q  14 agaatatagcgcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaat 113  Q
    |||||| ||||||||||||||||||| |||||||||||| |||||||| || | |||||| || ||| |||| || |||||  || ||||||||| ||||    
T  4626653 agaatagagcgcattcattacatcaccctcaagttcatcgtaagtgttgaaaacaatagccgatgctctgtgaaatctatctgccgcttcaatgagaaat 4626752  T
Q  114 tctaaaatgggatcttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtcta 213  Q
    ||||  |||  ||| ||  ||| |     |||||| | || | | || |||||||| ||||||||||||||||| |||||||| |||| |||||||||||    
T  4626753 tctaccatgacatcattaggatttgttgtccttataaagttaagaaggtccttcagccgaaagttctgcaatccgggaatacaatctagtttggtgtcta 4626852  T
Q  214 aa 215  Q
    ||    
T  4626853 aa 4626854  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 4557956 - 4558024
Alignment:
Q  143 ccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 211  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  4557956 ccttataaagtcaggcagatccttcagtcgaaagttctgcaatcctggaatacaatccactttagtgtc 4558024  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 4259584 - 4259534
Alignment:
Q  14 agaatatagcgcattcattacatcactctcaagttcatcataagtgttaaa 64  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  4259584 agaatagagcacattcattacatcactctcaagttcatcataagtgttaaa 4259534  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 4586349 - 4586535
Alignment:
Q  25 cattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatccc--ccacttcaatgacaaattctaaaatg 122  Q
    |||| ||||||||  |||||||||||||| |||| ||||| |||| ||||||| |||||||  |||  | ||  |  ||||||||| ||||||||  ||     
T  4586349 catttattacatccttctcaagttcatcagaagtattaaaaataaaagcagagtctttgtg--agccgttcctgcgccttcaatgataaattctatgatc 4586446  T
Q  123 ggatcttttcgatcttcaacccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 211  Q
    | ||| ||| ||||   || |||||| | |||||||| |||||| ||||||||||||| |||||||||||||||||| ||||| |||||    
T  4586447 gaatcatttggatcagtaatccttataaagtcaggcaaatcctttagtcgaaagttctccaatcctggaatacagtccactttagtgtc 4586535  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 205
Target Start/End: Complemental strand, 4613003 - 4612957
Alignment:
Q  159 agatccttcagtcgaaagttctgcaatcctggaatacagtctacttt 205  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||    
T  4613003 agatccttcagtcgaaagttctgcaatccttgaatacagtccacttt 4612957  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 4256041 - 4255985
Alignment:
Q  24 gcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggct 80  Q
    ||||||| |||||| ||||||||||||| |||||||||||| | |||||||||||||    
T  4256041 gcattcaatacatcgctctcaagttcattataagtgttaaaaacaatagcagaggct 4255985  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 4602494 - 4602531
Alignment:
Q  14 agaatatagcgcattcattacatcactctcaagttcat 51  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  4602494 agaatatagtgcattcattacatcactctcaagttcat 4602531  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 3172455 - 3172514
Alignment:
Q  26 attcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtg 85  Q
    |||||| ||||||||||||||||||| | ||||||| || | ||||||||| ||||||||    
T  3172455 attcataacatcactctcaagttcattagaagtgttgaaaacaatagcagaagctttgtg 3172514  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 4571814 - 4571871
Alignment:
Q  154 caggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 211  Q
    |||||| |||| ||||||||||||||| || |||||| |||||||| ||||| |||||    
T  4571814 caggcaaatccctcagtcgaaagttcttcagtcctggcatacagtccactttagtgtc 4571871  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 4599011 - 4599063
Alignment:
Q  153 tcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctacttt 205  Q
    ||||| ||||| |||||||||||||| |||| ||| |||||||| ||||||||    
T  4599011 tcaggaagatctttcagtcgaaagttttgcagtccaggaatacaatctacttt 4599063  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 16685587 - 16685519
Alignment:
Q  143 ccttattatgtcaggcagatccttcagtcgaaagttctgcaatcctggaatacagtctactttggtgtc 211  Q
    |||||| | |||||||||||||||||||||||  ||||||||||||||||||||||| ||||| |||||    
T  16685587 ccttataaagtcaggcagatccttcagtcgaatattctgcaatcctggaatacagtccactttagtgtc 16685519  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 20863262 - 20863170
Alignment:
Q  25 cattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatcccccacttcaatgacaaattcta 117  Q
    ||||||| |||||||||||||| ||||   |||| || || | ||||||||||||| |||| || |||||  | |||||||||| ||||||||    
T  20863262 cattcataacatcactctcaagctcattgaaagtattgaaaacaatagcagaggctctgtgaaatctatctactacttcaatgagaaattcta 20863170  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 24107077 - 24107136
Alignment:
Q  14 agaatatagcgcattcattacatcactctcaagttcatcataagtgttaaagataatagc 73  Q
    |||||| |||| |||||||||||||||||||||||||||||||| |||||| | ||||||    
T  24107077 agaatagagcgtattcattacatcactctcaagttcatcataagcgttaaaaacaatagc 24107136  T

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Target: scaffold0288 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 3141 - 3077
Alignment:
Q  21 agcgcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtg 85  Q
    |||||||||| |||||||||||||||||||| |||||||||||| | ||| ||||| ||| ||||    
T  3141 agcgcattcagtacatcactctcaagttcattataagtgttaaaaacaattgcagaagctctgtg 3077  T

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Target: scaffold0477 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 3971 - 3930
Alignment:
Q  162 tccttcagtcgaaagttctgcaatcctggaatacagtctact 203  Q
    |||||||| ||||||||||||||||||||||||| |||||||    
T  3971 tccttcagccgaaagttctgcaatcctggaataccgtctact 3930  T

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Target: scaffold0477; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 4119 - 4039
Alignment:
Q  14 agaatatagcgcattcattacatcactctcaagttcatcataagtgttaaagataatagcagaggctttgtgtaagctatc 94  Q
    |||||| || ||||||| |||| | |||||||||||||| |||||||| || | |||||  ||||||||||| || |||||    
T  4119 agaatagagagcattcaatacaccgctctcaagttcatcgtaagtgttgaaaacaatagtcgaggctttgtggaatctatc 4039  T

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