View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15428_low_3 (Length: 691)

Name: NF15428_low_3
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15428_low_3
NF15428_low_3
[»] chr5 (17 HSPs)
chr5 (91-397)||(42609595-42609904)
chr5 (546-673)||(42612603-42612730)
chr5 (390-459)||(42612465-42612534)
chr5 (91-122)||(11734496-11734527)
chr5 (91-122)||(14910341-14910372)
chr5 (91-122)||(17331767-17331798)
chr5 (91-122)||(23881767-23881798)
chr5 (91-122)||(26294049-26294080)
chr5 (91-122)||(33164120-33164151)
chr5 (91-122)||(39179496-39179527)
chr5 (91-121)||(9196683-9196713)
chr5 (91-121)||(20483625-20483655)
chr5 (91-121)||(34431503-34431533)
chr5 (91-121)||(39531060-39531090)
chr5 (91-121)||(42505065-42505095)
chr5 (91-119)||(6639420-6639448)
chr5 (91-119)||(42396164-42396192)
[»] scaffold0536 (1 HSPs)
scaffold0536 (91-122)||(3334-3365)
[»] scaffold0155 (1 HSPs)
scaffold0155 (91-122)||(35514-35545)
[»] chr8 (9 HSPs)
chr8 (91-122)||(2234129-2234160)
chr8 (91-122)||(24790829-24790860)
chr8 (91-122)||(31202887-31202918)
chr8 (91-121)||(37613075-37613105)
chr8 (91-119)||(2968954-2968982)
chr8 (91-119)||(19720452-19720480)
chr8 (94-122)||(20082497-20082525)
chr8 (91-119)||(38545478-38545506)
chr8 (91-119)||(41362172-41362200)
[»] chr7 (17 HSPs)
chr7 (91-122)||(2623031-2623062)
chr7 (91-122)||(6667834-6667865)
chr7 (91-122)||(9785756-9785787)
chr7 (91-122)||(21991101-21991132)
chr7 (91-122)||(23808765-23808796)
chr7 (91-122)||(46025706-46025737)
chr7 (91-122)||(48643477-48643508)
chr7 (91-121)||(4621032-4621062)
chr7 (91-121)||(33095788-33095818)
chr7 (91-121)||(37593522-37593552)
chr7 (91-121)||(38277236-38277266)
chr7 (91-121)||(39707707-39707737)
chr7 (91-121)||(44482530-44482560)
chr7 (91-121)||(48304044-48304074)
chr7 (91-120)||(37375709-37375738)
chr7 (91-119)||(11833457-11833485)
chr7 (91-119)||(15670464-15670492)
[»] chr6 (12 HSPs)
chr6 (91-122)||(4660867-4660898)
chr6 (91-122)||(5146365-5146396)
chr6 (91-122)||(12481030-12481061)
chr6 (91-122)||(15589776-15589807)
chr6 (91-122)||(23654688-23654719)
chr6 (91-122)||(30813496-30813527)
chr6 (91-122)||(35219564-35219595)
chr6 (91-121)||(5084974-5085004)
chr6 (91-121)||(12653970-12654000)
chr6 (91-121)||(19402504-19402534)
chr6 (92-122)||(21507505-21507535)
chr6 (94-122)||(1106514-1106542)
[»] chr4 (17 HSPs)
chr4 (91-122)||(13965982-13966013)
chr4 (91-122)||(14346849-14346880)
chr4 (91-122)||(42197992-42198023)
chr4 (91-122)||(43244032-43244063)
chr4 (91-121)||(393926-393956)
chr4 (91-121)||(477673-477703)
chr4 (91-121)||(7084381-7084411)
chr4 (91-121)||(8517111-8517141)
chr4 (91-121)||(24826078-24826108)
chr4 (91-121)||(38435016-38435046)
chr4 (91-121)||(45350722-45350752)
chr4 (91-121)||(45360201-45360231)
chr4 (91-121)||(55600198-55600228)
chr4 (91-119)||(7060753-7060781)
chr4 (91-119)||(23964088-23964116)
chr4 (91-119)||(33288811-33288839)
chr4 (91-119)||(48257427-48257455)
[»] chr3 (17 HSPs)
chr3 (91-122)||(11819523-11819554)
chr3 (91-122)||(13701661-13701692)
chr3 (91-122)||(14585901-14585932)
chr3 (91-122)||(19645629-19645660)
chr3 (91-122)||(24483355-24483386)
chr3 (91-122)||(33637833-33637864)
chr3 (91-122)||(53126262-53126293)
chr3 (91-122)||(55455301-55455332)
chr3 (91-121)||(49627764-49627794)
chr3 (91-121)||(55090359-55090389)
chr3 (91-119)||(2192517-2192545)
chr3 (91-119)||(34960591-34960619)
chr3 (91-119)||(36691461-36691489)
chr3 (91-119)||(48401531-48401559)
chr3 (91-119)||(50981128-50981156)
chr3 (91-119)||(51084262-51084290)
chr3 (91-119)||(54706394-54706422)
[»] chr2 (15 HSPs)
chr2 (91-122)||(3527425-3527456)
chr2 (91-122)||(13878660-13878691)
chr2 (91-122)||(14018785-14018816)
chr2 (91-122)||(16136517-16136548)
chr2 (91-122)||(25068280-25068311)
chr2 (91-122)||(27096128-27096159)
chr2 (91-122)||(36868447-36868478)
chr2 (91-122)||(38384117-38384148)
chr2 (91-122)||(43696307-43696338)
chr2 (91-121)||(18089064-18089094)
chr2 (91-121)||(20560785-20560815)
chr2 (91-121)||(29543232-29543262)
chr2 (91-121)||(33012487-33012517)
chr2 (91-121)||(35333944-35333974)
chr2 (93-122)||(33055809-33055838)
[»] chr1 (10 HSPs)
chr1 (91-122)||(4882028-4882059)
chr1 (91-122)||(10627444-10627475)
chr1 (91-122)||(12872045-12872076)
chr1 (91-122)||(13152866-13152897)
chr1 (91-122)||(26199998-26200029)
chr1 (91-122)||(29205707-29205738)
chr1 (91-122)||(44517587-44517618)
chr1 (91-121)||(34334762-34334792)
chr1 (91-119)||(3233210-3233238)
chr1 (91-119)||(25032757-25032785)
[»] scaffold0001 (1 HSPs)
scaffold0001 (91-121)||(403900-403930)
[»] scaffold0432 (1 HSPs)
scaffold0432 (91-119)||(2102-2130)


Alignment Details
Target: chr5 (Bit Score: 160; Significance: 7e-85; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 91 - 397
Target Start/End: Original strand, 42609595 - 42609904
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtcnnnnnnnn-tataataatttgggtcggatctcagataatccgttttgaatgaggtgacaccgatacat 189  Q
    ||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42609595 atttgaatgaatgaatatcgtttatttttgtcaaaaaaatatataataatttgggtcggatctcagataatccgttttgaatgaggtgacatcgatacat 42609694  T
Q  190 agataaatttgagcttgatttattttgttcgattttgatacgaacattgaaaaaatttgattttgatatgaacattgnnnnnnngaaaccgaactatgct 289  Q
    ||||||||||||| ||||||||||||||| |||||||||| |||||||||||   ||| ||||||||||||||||||       ||||||||||||||||    
T  42609695 agataaatttgagtttgatttattttgtttgattttgatatgaacattgaaatttttttattttgatatgaacattgaaaaaaagaaaccgaactatgct 42609794  T
Q  290 cctacctacatgcgtcnnnnnnngtgggacattactattgtcatgtttc--nnnnnnncatagtgtgttgagtgtctaatggtcttgatggaaaggagac 387  Q
    ||||||||||||||||       ||||||||||| ||||||||||||||         ||||||| ||||||||| ||||||||||||||||||||||||    
T  42609795 cctacctacatgcgtctttttttgtgggacattattattgtcatgtttctttttttttcatagtgggttgagtgtgtaatggtcttgatggaaaggagac 42609894  T
Q  388 ctaaatcttg 397  Q
    ||||||||||    
T  42609895 ctaaatcttg 42609904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 546 - 673
Target Start/End: Original strand, 42612603 - 42612730
Alignment:
Q  546 gtatctttaaaaaggaacatctattagaatgaccatctatttatttcacttctctctcttttcaagtatgaggcaaggtagagagagacacacgaggatc 645  Q
    ||||||||||||||||| ||||||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  42612603 gtatctttaaaaaggaatatctattagcatgaccatctatttctttcactcctctctcttctcaagtatgaggcaaggtagagagagacacacgaggatc 42612702  T
Q  646 taaaaatctcatatacaccacaagtcac 673  Q
    ||||||||||||||||||||||||||||    
T  42612703 taaaaatctcatatacaccacaagtcac 42612730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 390 - 459
Target Start/End: Original strand, 42612465 - 42612534
Alignment:
Q  390 aaatcttgtgtattcaatcaatttattatacaaggaaatagtaaagaatgtctttaagacatcagttaag 459  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  42612465 aaatcttatgtattcaatcaatttattatataaggaaatagtaaagaatgcctttaagacatcagttaag 42612534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 11734527 - 11734496
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  11734527 atttgaatgaatgaatatcgtttatttttgtc 11734496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 14910372 - 14910341
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  14910372 atttgaatgaatgaatatcgtttatttttgtc 14910341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 17331767 - 17331798
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  17331767 atttgaatgaatgaatatcgtttatttttgtc 17331798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 23881798 - 23881767
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  23881798 atttgaatgaatgaatatcgtttatttttgtc 23881767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 26294049 - 26294080
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  26294049 atttgaatgaatgaatatcgtttatttttgtc 26294080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 33164151 - 33164120
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  33164151 atttgaatgaatgaatatcgtttatttttgtc 33164120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 39179527 - 39179496
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  39179527 atttgaatgaatgaatatcgtttatttttgtc 39179496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 9196713 - 9196683
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  9196713 atttgaatgaatgaatatcgtttatttttgt 9196683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Original strand, 20483625 - 20483655
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  20483625 atttgaatgaatgaatatcgtttatttttgt 20483655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Original strand, 34431503 - 34431533
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  34431503 atttgaatgaatgaatatcgtttatttttgt 34431533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 39531090 - 39531060
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  39531090 atttgaatgaatgaatatcgtttatttttgt 39531060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 42505095 - 42505065
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  42505095 atttgaatgaatgaatatcgtttatttttgt 42505065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 6639420 - 6639448
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  6639420 atttgaatgaatgaatatcgtttattttt 6639448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 42396192 - 42396164
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  42396192 atttgaatgaatgaatatcgtttattttt 42396164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 3334 - 3365
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  3334 atttgaatgaatgaatatcgtttatttttgtc 3365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 35514 - 35545
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  35514 atttgaatgaatgaatatcgtttatttttgtc 35545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 2234160 - 2234129
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  2234160 atttgaatgaatgaatatcgtttatttttgtc 2234129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 24790860 - 24790829
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  24790860 atttgaatgaatgaatatcgtttatttttgtc 24790829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 31202887 - 31202918
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  31202887 atttgaatgaatgaatatcgtttatttttgtc 31202918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Original strand, 37613075 - 37613105
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  37613075 atttgaatgaatgaatatcgtttatttttgt 37613105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 2968954 - 2968982
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  2968954 atttgaatgaatgaatatcgtttattttt 2968982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 19720452 - 19720480
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  19720452 atttgaatgaatgaatatcgtttattttt 19720480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 94 - 122
Target Start/End: Original strand, 20082497 - 20082525
Alignment:
Q  94 tgaatgaatgaatatcgtttatttttgtc 122  Q
    |||||||||||||||||||||||||||||    
T  20082497 tgaatgaatgaatatcgtttatttttgtc 20082525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 38545506 - 38545478
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  38545506 atttgaatgaatgaatatcgtttattttt 38545478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 41362172 - 41362200
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  41362172 atttgaatgaatgaatatcgtttattttt 41362200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 2623031 - 2623062
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  2623031 atttgaatgaatgaatatcgtttatttttgtc 2623062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 6667834 - 6667865
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  6667834 atttgaatgaatgaatatcgtttatttttgtc 6667865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 9785756 - 9785787
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  9785756 atttgaatgaatgaatatcgtttatttttgtc 9785787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 21991101 - 21991132
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  21991101 atttgaatgaatgaatatcgtttatttttgtc 21991132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 23808765 - 23808796
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  23808765 atttgaatgaatgaatatcgtttatttttgtc 23808796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 46025737 - 46025706
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  46025737 atttgaatgaatgaatatcgtttatttttgtc 46025706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 48643508 - 48643477
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  48643508 atttgaatgaatgaatatcgtttatttttgtc 48643477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 4621062 - 4621032
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  4621062 atttgaatgaatgaatatcgtttatttttgt 4621032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 33095818 - 33095788
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  33095818 atttgaatgaatgaatatcgtttatttttgt 33095788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Original strand, 37593522 - 37593552
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  37593522 atttgaatgaatgaatatcgtttatttttgt 37593552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Original strand, 38277236 - 38277266
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  38277236 atttgaatgaatgaatatcgtttatttttgt 38277266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Original strand, 39707707 - 39707737
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  39707707 atttgaatgaatgaatatcgtttatttttgt 39707737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 44482560 - 44482530
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  44482560 atttgaatgaatgaatatcgtttatttttgt 44482530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 48304074 - 48304044
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  48304074 atttgaatgaatgaatatcgtttatttttgt 48304044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 120
Target Start/End: Complemental strand, 37375738 - 37375709
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttg 120  Q
    ||||||||||||||||||||||||||||||    
T  37375738 atttgaatgaatgaatatcgtttatttttg 37375709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 11833457 - 11833485
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  11833457 atttgaatgaatgaatatcgtttattttt 11833485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 15670492 - 15670464
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  15670492 atttgaatgaatgaatatcgtttattttt 15670464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 4660867 - 4660898
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  4660867 atttgaatgaatgaatatcgtttatttttgtc 4660898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 5146365 - 5146396
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  5146365 atttgaatgaatgaatatcgtttatttttgtc 5146396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 12481061 - 12481030
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  12481061 atttgaatgaatgaatatcgtttatttttgtc 12481030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 15589807 - 15589776
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  15589807 atttgaatgaatgaatatcgtttatttttgtc 15589776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 23654688 - 23654719
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  23654688 atttgaatgaatgaatatcgtttatttttgtc 23654719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 30813496 - 30813527
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  30813496 atttgaatgaatgaatatcgtttatttttgtc 30813527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 35219595 - 35219564
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  35219595 atttgaatgaatgaatatcgtttatttttgtc 35219564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Original strand, 5084974 - 5085004
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  5084974 atttgaatgaatgaatatcgtttatttttgt 5085004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 12654000 - 12653970
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  12654000 atttgaatgaatgaatatcgtttatttttgt 12653970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 19402534 - 19402504
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  19402534 atttgaatgaatgaatatcgtttatttttgt 19402504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 92 - 122
Target Start/End: Complemental strand, 21507535 - 21507505
Alignment:
Q  92 tttgaatgaatgaatatcgtttatttttgtc 122  Q
    |||||||||||||||||||||||||||||||    
T  21507535 tttgaatgaatgaatatcgtttatttttgtc 21507505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 94 - 122
Target Start/End: Complemental strand, 1106542 - 1106514
Alignment:
Q  94 tgaatgaatgaatatcgtttatttttgtc 122  Q
    |||||||||||||||||||||||||||||    
T  1106542 tgaatgaatgaatatcgtttatttttgtc 1106514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 13965982 - 13966013
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  13965982 atttgaatgaatgaatatcgtttatttttgtc 13966013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 14346849 - 14346880
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  14346849 atttgaatgaatgaatatcgtttatttttgtc 14346880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 42197992 - 42198023
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  42197992 atttgaatgaatgaatatcgtttatttttgtc 42198023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 43244063 - 43244032
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  43244063 atttgaatgaatgaatatcgtttatttttgtc 43244032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 393956 - 393926
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  393956 atttgaatgaatgaatatcgtttatttttgt 393926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 477703 - 477673
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  477703 atttgaatgaatgaatatcgtttatttttgt 477673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Original strand, 7084381 - 7084411
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  7084381 atttgaatgaatgaatatcgtttatttttgt 7084411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 8517141 - 8517111
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  8517141 atttgaatgaatgaatatcgtttatttttgt 8517111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Original strand, 24826078 - 24826108
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  24826078 atttgaatgaatgaatatcgtttatttttgt 24826108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Original strand, 38435016 - 38435046
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  38435016 atttgaatgaatgaatatcgtttatttttgt 38435046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 45350752 - 45350722
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  45350752 atttgaatgaatgaatatcgtttatttttgt 45350722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 45360231 - 45360201
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  45360231 atttgaatgaatgaatatcgtttatttttgt 45360201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 55600228 - 55600198
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  55600228 atttgaatgaatgaatatcgtttatttttgt 55600198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 7060753 - 7060781
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  7060753 atttgaatgaatgaatatcgtttattttt 7060781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 23964088 - 23964116
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  23964088 atttgaatgaatgaatatcgtttattttt 23964116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 33288839 - 33288811
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  33288839 atttgaatgaatgaatatcgtttattttt 33288811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 48257455 - 48257427
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  48257455 atttgaatgaatgaatatcgtttattttt 48257427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 11819523 - 11819554
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  11819523 atttgaatgaatgaatatcgtttatttttgtc 11819554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 13701692 - 13701661
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  13701692 atttgaatgaatgaatatcgtttatttttgtc 13701661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 14585901 - 14585932
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  14585901 atttgaatgaatgaatatcgtttatttttgtc 14585932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 19645629 - 19645660
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  19645629 atttgaatgaatgaatatcgtttatttttgtc 19645660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 24483386 - 24483355
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  24483386 atttgaatgaatgaatatcgtttatttttgtc 24483355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 33637833 - 33637864
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  33637833 atttgaatgaatgaatatcgtttatttttgtc 33637864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 53126262 - 53126293
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  53126262 atttgaatgaatgaatatcgtttatttttgtc 53126293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 55455301 - 55455332
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  55455301 atttgaatgaatgaatatcgtttatttttgtc 55455332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 49627794 - 49627764
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  49627794 atttgaatgaatgaatatcgtttatttttgt 49627764  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 55090389 - 55090359
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  55090389 atttgaatgaatgaatatcgtttatttttgt 55090359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 2192517 - 2192545
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  2192517 atttgaatgaatgaatatcgtttattttt 2192545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 34960619 - 34960591
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  34960619 atttgaatgaatgaatatcgtttattttt 34960591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 36691489 - 36691461
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  36691489 atttgaatgaatgaatatcgtttattttt 36691461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 48401531 - 48401559
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  48401531 atttgaatgaatgaatatcgtttattttt 48401559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 50981156 - 50981128
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  50981156 atttgaatgaatgaatatcgtttattttt 50981128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 51084290 - 51084262
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  51084290 atttgaatgaatgaatatcgtttattttt 51084262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 54706422 - 54706394
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  54706422 atttgaatgaatgaatatcgtttattttt 54706394  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 3527425 - 3527456
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  3527425 atttgaatgaatgaatatcgtttatttttgtc 3527456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 13878691 - 13878660
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  13878691 atttgaatgaatgaatatcgtttatttttgtc 13878660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 14018816 - 14018785
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  14018816 atttgaatgaatgaatatcgtttatttttgtc 14018785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 16136517 - 16136548
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  16136517 atttgaatgaatgaatatcgtttatttttgtc 16136548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 25068280 - 25068311
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  25068280 atttgaatgaatgaatatcgtttatttttgtc 25068311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 27096128 - 27096159
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  27096128 atttgaatgaatgaatatcgtttatttttgtc 27096159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 36868447 - 36868478
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  36868447 atttgaatgaatgaatatcgtttatttttgtc 36868478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 38384148 - 38384117
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  38384148 atttgaatgaatgaatatcgtttatttttgtc 38384117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 43696307 - 43696338
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  43696307 atttgaatgaatgaatatcgtttatttttgtc 43696338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 18089094 - 18089064
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  18089094 atttgaatgaatgaatatcgtttatttttgt 18089064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 20560815 - 20560785
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  20560815 atttgaatgaatgaatatcgtttatttttgt 20560785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Original strand, 29543232 - 29543262
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  29543232 atttgaatgaatgaatatcgtttatttttgt 29543262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Original strand, 33012487 - 33012517
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  33012487 atttgaatgaatgaatatcgtttatttttgt 33012517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Original strand, 35333944 - 35333974
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  35333944 atttgaatgaatgaatatcgtttatttttgt 35333974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 122
Target Start/End: Complemental strand, 33055838 - 33055809
Alignment:
Q  93 ttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||    
T  33055838 ttgaatgaatgaatatcgtttatttttgtc 33055809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Complemental strand, 4882059 - 4882028
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  4882059 atttgaatgaatgaatatcgtttatttttgtc 4882028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 10627444 - 10627475
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  10627444 atttgaatgaatgaatatcgtttatttttgtc 10627475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 12872045 - 12872076
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  12872045 atttgaatgaatgaatatcgtttatttttgtc 12872076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 13152866 - 13152897
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  13152866 atttgaatgaatgaatatcgtttatttttgtc 13152897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 26199998 - 26200029
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  26199998 atttgaatgaatgaatatcgtttatttttgtc 26200029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 29205707 - 29205738
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  29205707 atttgaatgaatgaatatcgtttatttttgtc 29205738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 122
Target Start/End: Original strand, 44517587 - 44517618
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgtc 122  Q
    ||||||||||||||||||||||||||||||||    
T  44517587 atttgaatgaatgaatatcgtttatttttgtc 44517618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 34334792 - 34334762
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  34334792 atttgaatgaatgaatatcgtttatttttgt 34334762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Original strand, 3233210 - 3233238
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  3233210 atttgaatgaatgaatatcgtttattttt 3233238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 25032785 - 25032757
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  25032785 atttgaatgaatgaatatcgtttattttt 25032757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 91 - 121
Target Start/End: Complemental strand, 403930 - 403900
Alignment:
Q  91 atttgaatgaatgaatatcgtttatttttgt 121  Q
    |||||||||||||||||||||||||||||||    
T  403930 atttgaatgaatgaatatcgtttatttttgt 403900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 91 - 119
Target Start/End: Complemental strand, 2130 - 2102
Alignment:
Q  91 atttgaatgaatgaatatcgtttattttt 119  Q
    |||||||||||||||||||||||||||||    
T  2130 atttgaatgaatgaatatcgtttattttt 2102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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