View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15428_low_35 (Length: 223)
Name: NF15428_low_35
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15428_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 10866288 - 10866476
Alignment:
| Q |
18 |
aaaagatccgaacctctacacctctccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10866288 |
aaaagatccgaacctctacacctctccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttctt |
10866387 |
T |
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| Q |
118 |
cggcattgccttcatccttcattacgatgaagaagaagaagacattgctgaaaaaaccactcaaggagtcttgccgaagaagctaccta |
206 |
Q |
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| T |
10866388 |
cggcattgccttcatccttcattacgatgaagaagaagaagacattgctgcaaaaaccactcaaggagtcttgccgaagaagctaccta |
10866476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 10874017 - 10873829
Alignment:
| Q |
18 |
aaaagatccgaacctctacacctctccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10874017 |
aaaagatccgaacctctacacctctccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttctt |
10873918 |
T |
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| Q |
118 |
cggcattgccttcatccttcattacgatgaagaagaagaagacattgctgaaaaaaccactcaaggagtcttgccgaagaagctaccta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10873917 |
cggcattgccttcatccttcattacgatgaagaagaagaagacattgctgcaaaaaccactcaaggagtcttgccgaagaagctaccta |
10873829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 10879088 - 10878900
Alignment:
| Q |
18 |
aaaagatccgaacctctacacctctccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttctt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10879088 |
aaaagatccgaacctctacacctctccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttctt |
10878989 |
T |
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| Q |
118 |
cggcattgccttcatccttcattacgatgaagaagaagaagacattgctgaaaaaaccactcaaggagtcttgccgaagaagctaccta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10878988 |
cggcattgccttcatccttcattacgatgaagaagaagaagacattgctgcaaaaaccactcaaggagtcttgccgaagaagctaccta |
10878900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 10884159 - 10883971
Alignment:
| Q |
18 |
aaaagatccgaacctctacacctctccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttctt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10884159 |
aaaagatccgaacctctacacctctccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttctt |
10884060 |
T |
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| Q |
118 |
cggcattgccttcatccttcattacgatgaagaagaagaagacattgctgaaaaaaccactcaaggagtcttgccgaagaagctaccta |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10884059 |
cggcattgccttcatccttcattacgatgaagaagaagaagacattgctgcaaaaaccactcaaggagtcttgccgaagaagctaccta |
10883971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 10888086 - 10887948
Alignment:
| Q |
18 |
aaaagatccgaacctctacacctctccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttctt |
117 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||| ||||||||||| | ||| | |||||||||||||||||||| ||||||||||| ||||||| |
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| T |
10888086 |
aaaagatccgaacctctacacctctccacatcctcacagtctctgagattgttgctgtagtttccctcatcgcttccttcgtctaccttattgctttctt |
10887987 |
T |
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| Q |
118 |
cggcattgccttcatccttcattacgatgaagaagaaga |
156 |
Q |
| |
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||||| |||||||||| ||||||||||||| || ||||| |
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| T |
10887986 |
cggcactgccttcatcattcattacgatgatgatgaaga |
10887948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 39675861 - 39675999
Alignment:
| Q |
18 |
aaaagatccgaacctctacacctctccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttctt |
117 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||||| |||| | || ||||||||| ||||||| |
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| T |
39675861 |
aaaagatccgaacctctacacctctccatgtcctcacaatctccgagattcttgctctagtttccctcattgcttgccttatctaccttacggctttctt |
39675960 |
T |
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| Q |
118 |
cggcattgccttcatccttcattacgatgaagaagaaga |
156 |
Q |
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||| |||||||||||||||||||||||||||||||||| |
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| T |
39675961 |
tggcgttgccttcatccttcattacgatgaagaagaaga |
39675999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 10045856 - 10045975
Alignment:
| Q |
20 |
aagatccgaacctctacacctctccacgtcctcacaatctctgagattctcgctcttgtttccctcatcgcttcctttgtctaccttatcactttcttcg |
119 |
Q |
| |
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|||||||||||||| |||||||| || || |||||||||||||||||| || | ||||||||||||| ||||||||| | |||||||| ||||||||| |
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| T |
10045856 |
aagatccgaacctccacacctcttcatgttctcacaatctctgagattgccggtgttgtttccctcatagcttcctttatttaccttatggctttcttcg |
10045955 |
T |
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| Q |
120 |
gcattgccttcatccttcat |
139 |
Q |
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|||||| |||||| |||||| |
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| T |
10045956 |
gcattggcttcattcttcat |
10045975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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