View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15428_low_5 (Length: 624)
Name: NF15428_low_5
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15428_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 7 - 607
Target Start/End: Original strand, 5098253 - 5098858
Alignment:
| Q |
7 |
tccaagaatataataataagaaaaatatagtgacacaagacaattctaagtaattatgtataaggcaattcaatagaaaataaaaaagtcaaatagtttc |
106 |
Q |
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| T |
5098253 |
tccaaaaaaataataataagaaaaatatagtgacacaagacaattctaagtaattatgtataaggcaattcaatagaaaataaaaaagtcaaatagtttc |
5098352 |
T |
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| Q |
107 |
atgtgacaattttaaacattaaccttgtgactctgtttgggacaactgaaaaattgagagctagcagtgtcatcaagaggtgaaggttgttgacttgtat |
206 |
Q |
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| T |
5098353 |
atgtaacaattttaaacattaaccttgtgactctgtttgggacaactgaaaaattgagagctagcagtgtcatcaagaggtgaaggttgttgacttgtat |
5098452 |
T |
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| Q |
207 |
catattctttgacttttttcttcttttgggattctttggttgttgaagaaagacatgtataccaattctcacattggtattcattgtcataatgtggagg |
306 |
Q |
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| T |
5098453 |
catattctttgacttttttcttcttttgggtttctttggttgttgaagaaagacatgtataccaattctcacattggtattcattgtcataatgtggagg |
5098552 |
T |
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| Q |
307 |
tccagatgatgcatcagataccattgataaatcttcttcagattccaccttctcatccatgaccattctagctccttttccttcattctctacaatctca |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5098553 |
tccagatgatgcatcagataccattgataaatcttcttcagattcctccttctcatccatgaccattctagctccttttccttcattctctacaatctca |
5098652 |
T |
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| Q |
407 |
tctttactttggaaataactctcagaaaaagaggattggaccaagtagtgagtccaaccagattcactagcatcactatattttgaggcagatatatcca |
506 |
Q |
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| T |
5098653 |
tctttactttggaaataactctcagaaaaagaggattggaccaagtagtgagtccaaccagattcactagcatcactatattttgaggcagatatatcca |
5098752 |
T |
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| Q |
507 |
ttcaattcaac-----nnnnnnnnnnnnnnnngtagttctcaatatgagttagtgatcaagtgaaatatcatagaggcgtagaagtcttattatatagtt |
601 |
Q |
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| T |
5098753 |
ttcaattcaaccttttttttttttttttttttgtagttctcaatatgagttagtgatcaagtgaaatatcatagaggcgtagaagtcttattatatagtt |
5098852 |
T |
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| Q |
602 |
tttctc |
607 |
Q |
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| T |
5098853 |
tttctc |
5098858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 299 - 345
Target Start/End: Complemental strand, 47592082 - 47592036
Alignment:
| Q |
299 |
tgtggaggtccagatgatgcatcagataccattgataaatcttcttc |
345 |
Q |
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| T |
47592082 |
tgtggaggtccagaagaagcatcagaaaccatggataaatcttcttc |
47592036 |
T |
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