View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15428_low_9 (Length: 554)
Name: NF15428_low_9
Description: NF15428
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15428_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 4e-95; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 277 - 461
Target Start/End: Complemental strand, 36695347 - 36695163
Alignment:
| Q |
277 |
cacctcctcgctgaactcagatcctccacggttgttgtagggactatggttcagcagttgtgggaaccggtaatgttatgttaccgattctcctcctttc |
376 |
Q |
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| T |
36695347 |
cacctcctcgctgaactcagatcctctacggttgttgtagggactatggtgcagcagttgtgggaaccggtaatgttatgttaccgattctcctcctttc |
36695248 |
T |
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| Q |
377 |
ttttaactctttacctattaccaagaccacaccaaaatctttttccaaagctcgtttcctatagggtatacaaaacggacaaata |
461 |
Q |
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| T |
36695247 |
ttttaactctttacctattaccaagaccacaccaaaatctttttccaaagctcgtttcctatagggtatacaaaacggacaaata |
36695163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 36695589 - 36695413
Alignment:
| Q |
23 |
aggaagccagcaaatggttatggtgatgattctgacacattaaggggatttgaatatgcagccataggttttgtaatgtcgtaaaaaagtaagtatcatt |
122 |
Q |
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| T |
36695589 |
aggaagccaccaaatggttatggtgatgattctgacacattaaggggatttgaatatgcagccataggttttgtaatgtcgtaaaaaagtaagtatcatt |
36695490 |
T |
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| Q |
123 |
gtgagaaaatgttgtataatatgtataatacgtctcccccacgccacatatattaaaaaagtgaacatgaactccat |
199 |
Q |
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| T |
36695489 |
gtgagaaaaagttgtataatatgtataatacgtctcccccacgccacatatattaaaaaagtgaacatgaactccat |
36695413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 279 - 451
Target Start/End: Complemental strand, 36675668 - 36675496
Alignment:
| Q |
279 |
cctcctcgctgaactcagatcctccacggttgttgtagggactatggttcagcagttgtgggaaccggtaatgttatgttaccgattctcctcctttctt |
378 |
Q |
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| T |
36675668 |
cctcctcgctgaactcagatcctccacggttgttgtagggactatggtgcagcaaatgtaggaaccggtaacgttatgttaccgagtctcctcctttcct |
36675569 |
T |
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| Q |
379 |
ttaactctttacctattaccaagaccacaccaaaatctttttccaaagctcgtttcctatagggtatacaaaa |
451 |
Q |
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| T |
36675568 |
tgaagtctttacctattaccaagaccacaccaaaatctttttccaaagctcgtttgctatagggtataaaaaa |
36675496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 36675852 - 36675762
Alignment:
| Q |
141 |
atatgtataatacgtctcccccacgccacatatattaaaaaagtgaacatgaactccattttcctctccatcctctacatctccctcatacttgta |
236 |
Q |
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| T |
36675852 |
atatgtataatatgtctcccccac-----atatattaaaaaattgaacatgaactccattttcctctccatcctctacatctccctcatacttgta |
36675762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 502 - 549
Target Start/End: Complemental strand, 36695123 - 36695076
Alignment:
| Q |
502 |
ataaatatctcaatcattggattaatccaacgggaatggatgagaata |
549 |
Q |
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| T |
36695123 |
ataaatatctcaatcattggattaatccaacgggaacggatgagaata |
36695076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 36676050 - 36676002
Alignment:
| Q |
33 |
caaatggttatggtgatgattctgacacattaaggggatttgaatatgc |
81 |
Q |
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| T |
36676050 |
caaatggttctggtgatgattctgacacattaaggggattagaatatgc |
36676002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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