View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15429_low_1 (Length: 764)
Name: NF15429_low_1
Description: NF15429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15429_low_1 |
 | |
|
| [»] scaffold0246 (2 HSPs) |
| | |
|
| [»] scaffold0048 (1 HSPs) |
| | |
|
| [»] scaffold0057 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 716; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 716; E-Value: 0
Query Start/End: Original strand, 1 - 747
Target Start/End: Complemental strand, 42259581 - 42258834
Alignment:
| Q |
1 |
cttggagttggaggagaagattgtggatgtgggaagaagaaatgttagaggggtgtaggctattacttgatggtgtatttgtgcaggctaatattcttga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42259581 |
cttggagttggaggagaagattgtggatgtgggaagaagaaatgttagaggggtgtaggctattacttgatagtgtatttgtgcaggctaatattcttga |
42259482 |
T |
|
| Q |
101 |
caggtggcagtggcatccagacatacatgacggatatactgtgcgaggttcttatcacattatgacaactccggtctcttccacttttgacgcaattaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42259481 |
caggtggcagtggcatccagacatacatgagggatatactgtgcgaggttcttatcacattatgacaactccggtctcttccacttttgacgcaattaga |
42259382 |
T |
|
| Q |
201 |
gatctcatttggcataagcaggttcgtctaaaggttttcattgttgcttggcgtctgctaaaggacaatctcccaaccataaacaatctcctaaggcgcg |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42259381 |
gatctcatttggcataagcaggttcctctaaaggttttcattgttgcttggcgtctgctaaaggacaatctcccaaccataaacaatctcctaaggcgcg |
42259282 |
T |
|
| Q |
301 |
gcatagtgcaagtggcgggggctacgtgtgttgcagggtgcgggcttgaggagtcagcagctcacttgtttattcattgcgacatgttcagttggttgtg |
400 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42259281 |
gcatagtgcaagcggcgggggctacgtgtgttgcagggtgcgggcttgaggagtcagcagctcacttgtttattcattgcgacatgttcagttggttgtg |
42259182 |
T |
|
| Q |
401 |
gcagcaaattagagcctggattggagtggcgggagtagacccgtttagcatcattgagcattttctccaatttattcattatacaggttcctcaaaagtt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42259181 |
gcagcaaattagagcctggattggagtggcgggagtagacccgtttagcatcattgagcattttctccaatttattcattatacaggttccttaaaagtt |
42259082 |
T |
|
| Q |
501 |
cgtcgtttgtttcttcaattactgtggcttcttggtgtttggctgatatggagtgaacgttataacagagtattcaaaaatgtcgaaactcctatctttc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42259081 |
cgtcgtttgtttcttcaattactgtggcttcttggtgtttggctgatatggagtgaacgttataacagagtattcaaaaatgtcgaaactcctatctttc |
42258982 |
T |
|
| Q |
601 |
agcttttagaaaaagtaaaattccattcaatatgatggccgaaggctaataatgccaagtttgtttatggtttgcagagttggtagtcggatcctttgtt |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42258981 |
agcttttagaaaaagtaaaattccattcaatatgatggctgaaggctaataatgccaagtttgtttatggtttgcagagttggtagtcggatcctttgtt |
42258882 |
T |
|
| Q |
701 |
ttgttt-gggtatcgactaacatgtatttcttgtatatactttgtatg |
747 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42258881 |
ttgtttggggtatcgactaacatgtatttcttgtatatactttgtatg |
42258834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 3 - 663
Target Start/End: Original strand, 42039546 - 42040201
Alignment:
| Q |
3 |
tggagttggaggagaagattgtggatgtgggaagaagaaatgttagaggggtgtaggctattacttgatggtgtatttgtgcaggctaatattcttgaca |
102 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| || |||| ||||||||| |
|
|
| T |
42039546 |
tggagttggaggagaaggttgtgggtgtgggaagaagaaatgttagaggagtgtaggcaattacttgatgttgtatttgtgcgggttaatgttcttgaca |
42039645 |
T |
|
| Q |
103 |
ggtggcagtggcatccagacatacatgacggatatactgtgcgaggttcttatcacattatgacaactccggtctcttccacttttgacgcaattagaga |
202 |
Q |
| |
|
||||||||||| | || ||| | |||||||||||||| || |||||| ||||||| ||| ||||||| ||| || || |||||||| | || |||| | |
|
|
| T |
42039646 |
ggtggcagtgggacccggacgttcatgacggatataccgttcgaggtgcttatcagattctgacaacaccgatccagtctacttttgatgtaactagaaa |
42039745 |
T |
|
| Q |
203 |
tctcatttggcataagcaggttcgtctaaaggttttcattgttgcttggcgtctgctaaaggacaatctcccaaccataaacaatctcctaaggcgcggc |
302 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||| ||||| |||| || |||||| | ||| | |
|
|
| T |
42039746 |
tctcatctggcataagcaggttcccctaaaggttttcattgttgcctggcgtctgttaaaggacaggctccctaccagaatcaatctttttcggcagagt |
42039845 |
T |
|
| Q |
303 |
atagtgcaagtggcgggggctacgtgtgttgcagggtgcgggcttgaggagtcagcagctcacttgtttattcattgcgacatgttcagttggttgtggc |
402 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| ||| ||||| |||||| |
|
|
| T |
42039846 |
atagtgcaagtggcgggggttatgtgtgttgcagggtgcgggcatgaggagtcagcaactcacttgtttattcattgtgacgtgtacagttcactgtggc |
42039945 |
T |
|
| Q |
403 |
agcaaattagagcctggattggagtggcgggagtagacccgtttagcatcattgagcattttctccaatttattcattatacaggttcctcaaaagttcg |
502 |
Q |
| |
|
|||| ||||| ||||||| |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
42039946 |
agcacattagggcctgga-----gtggcgggagtagacccgttgagcatcactgaccattttctccaatttattcattatacaggttcctctaaagctcg |
42040040 |
T |
|
| Q |
503 |
tcgtttgtttcttcaattactgtggcttcttggtgtttggctgatatggagtgaacgttataacagagtattcaaaaatgtcgaaactcctatctttcag |
602 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| | |||| ||||| |||||||| | |||||||||||||| ||| |
|
|
| T |
42040041 |
tcgttcgtttcttcaattattgtggcttcttggtatttggctgatatggagtgaacataataatagagttttcaaaaacattgaaactcctatcttacag |
42040140 |
T |
|
| Q |
603 |
cttttagaaaaagtaaaattccattcaatatgatggccgaaggctaataatgccaagtttg |
663 |
Q |
| |
|
|||| |||||||||||||| |||||| |||| |||| |||||||||||||||||||||| |
|
|
| T |
42040141 |
ttttttgaaaaagtaaaattgcattcattatggtggctaaaggctaataatgccaagtttg |
42040201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 3 - 580
Target Start/End: Original strand, 40167208 - 40167785
Alignment:
| Q |
3 |
tggagttggaggagaagattgtggatgtgggaagaagaaatgttagaggggtgtaggctattacttgatggtgtatttgtgcaggctaatattcttgaca |
102 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
40167208 |
tggagttagaggagaagattgtggacgtgggaagaagaaatgttagcggagtgtaggctattatttgatggtgtatttgtgcaggctaatattcttgaca |
40167307 |
T |
|
| Q |
103 |
ggtggcagtggcatccagacatacatgacggatatactgtgcgaggttcttatcacattatgacaactccggtctcttccacttttgacgcaattagaga |
202 |
Q |
| |
|
|||||| |||| |||||||||||||||| || ||||| ||||||||| |||||| ||| || |||||||| | | || | | ||||| ||| ||| || |
|
|
| T |
40167308 |
ggtggctgtgggatccagacatacatgatgggtatacagtgcgaggtgcttatcggattctgtcaactccgatgttgtcaaatcttgacacaaatagcga |
40167407 |
T |
|
| Q |
203 |
tctcatttggcataagcaggttcgtctaaaggttttcattgttgcttggcgtctgctaaaggacaatctcccaaccataaacaatctcctaaggcgcggc |
302 |
Q |
| |
|
|| ||||||||||||||||||| | |||||| | ||| |||||||||||| | |||| |||| |||||||||| |||||| || || ||||| || |
|
|
| T |
40167408 |
tcatatttggcataagcaggttccccgaaaggtctccat-gttgcttggcgtttattaaatgacaggctcccaaccagaaacaaccttgtacggcgcagc |
40167506 |
T |
|
| Q |
303 |
atagtgcaagtggcgggggctacgtgtgttgcagggtgcgggcttgaggagtcagcagctcacttgtttattcattgcgacatgttcagttggttgtggc |
402 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||||| | ||| ||| ||| ||||| || ||||||||| ||||||||| | ||||||| ||||||| |
|
|
| T |
40167507 |
atagtgcaagtggcagggaatacgtgtgttgcagggcgtggggttggggaatcagctgcgcacttgtttcttcattgcggtgttttcagttccttgtggc |
40167606 |
T |
|
| Q |
403 |
agcaaattagagcctggattggagtggcgggagtagacccgtttagcatcattgagcattttctccaatttattcattatacaggttcctcaaaagttcg |
502 |
Q |
| |
|
||||| ||| || || |||||||||| |||||| |||||||||||||| |||||||||| |||||||||||||||||| | ||||||||||| ||| |
|
|
| T |
40167607 |
agcaatttaaggcatgtattggagtggagggagttgacccgtttagcatttctgagcattttatccaatttattcattatataaattcctcaaaagctcg |
40167706 |
T |
|
| Q |
503 |
tcgtttgtttcttcaattactgtggcttcttggtgtttggctgatatggagtgaacgttat-aacagagtattcaaaaa |
580 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| || |||| |||||||||||| |
|
|
| T |
40167707 |
ctgttcttttcttcaattattgtggcttcttggtgtttggctgatacggagtgaacgtaataaacaaagtattcaaaaa |
40167785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 571 - 688
Target Start/End: Original strand, 40168009 - 40168126
Alignment:
| Q |
571 |
tattcaaaaatgtcgaaactcctatctttcagcttttagaaaaagtaaaattccattcaatatgatggccgaaggctaataatgccaagtttgtttatgg |
670 |
Q |
| |
|
|||| |||||||||||||| || || ||||| |||||||| |||||||||||| ||||| |||| | | | |||||||||||||||||||||| ||||| |
|
|
| T |
40168009 |
tattaaaaaatgtcgaaacgccaatttttcaacttttagataaagtaaaattctattcattatggtagttggaggctaataatgccaagtttgtgtatgg |
40168108 |
T |
|
| Q |
671 |
tttgcagagttggtagtc |
688 |
Q |
| |
|
|||||| || |||||||| |
|
|
| T |
40168109 |
tttgcatagatggtagtc |
40168126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 510 - 717
Target Start/End: Original strand, 22179327 - 22179534
Alignment:
| Q |
510 |
tttcttcaattactgtggcttcttggtgtttggctgatatggagtgaacgttataacagagtattcaaaaatgtcgaaactcctatctttcagcttttag |
609 |
Q |
| |
|
||||||||||| | ||||| |||||||| |||||| | ||| ||||||| | ||||| ||||||| ||| | ||||||||||| || || ||| ||| |
|
|
| T |
22179327 |
tttcttcaattgttttggctccttggtgtgtggctggtttggggtgaacgcaacaacaggttattcaataatatagaaactcctattttacaacttctag |
22179426 |
T |
|
| Q |
610 |
aaaaagtaaaattccattcaatatgatggccgaaggctaataatgccaagtttgtttatggtttgcagagttggtagtcggatcctttgttttgtttggg |
709 |
Q |
| |
|
| |||||||| || |||||| | || |||| || |||||||||| || ||||| || |||| ||||| ||||||||||| | ||| |||||||||| |
|
|
| T |
22179427 |
agaaagtaaagtttcattcattttggtggctaaaagctaataatgtcatgtttgagtacggttctcagagatggtagtcggaccatttaatttgtttggg |
22179526 |
T |
|
| Q |
710 |
tatcgact |
717 |
Q |
| |
|
|||||||| |
|
|
| T |
22179527 |
tatcgact |
22179534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 510 - 744
Target Start/End: Original strand, 5909411 - 5909643
Alignment:
| Q |
510 |
tttcttcaattactgtggcttcttggtgtttggctgatatggagtgaacgttataacagagtattcaaaaatgtcgaaactcctatctttcagcttttag |
609 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||| |||| |||||| |||||||| ||||||| | | |||||| || || |||||| ||| |
|
|
| T |
5909411 |
tttcttcaattgatttggcttcttggtgtgtggctgatctggaatgaacgcaataacagactattcaatgacatagaaacttctgatttacagcttctag |
5909510 |
T |
|
| Q |
610 |
aaaaagtaaaattccattcaatatgatggccgaaggctaataatgccaagtttgtttatggtttgcagagttggtagtcggatcctttgttttgtttggg |
709 |
Q |
| |
|
| ||||||||||| || || || |||| ||| || ||||| |||| ||||| || | || ||||| |||| |||||| |||||| |||||||||| |
|
|
| T |
5909511 |
agaaagtaaaatttcactcgtattggtggctgaaagcaaataacgccacttttgtgtacgattctcagagatggtggtcggaccctttgatttgtttggg |
5909610 |
T |
|
| Q |
710 |
tatcgactaacatgtatttcttgtatatactttgt |
744 |
Q |
| |
|
|||| |||||| | | || ||||||||||||||| |
|
|
| T |
5909611 |
tatcaactaacctttgtt--ttgtatatactttgt |
5909643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 380121 - 380037
Alignment:
| Q |
82 |
tgcaggctaatattcttgacaggtggcagtggcatccagacatacatgacggatatactgtgcgaggttcttatcacattatgac |
166 |
Q |
| |
|
||||| ||||| |||||||||||||||||||| | || ||||| || || ||||||||||| ||| |||||||||||||||| |
|
|
| T |
380121 |
tgcagactaatgttcttgacaggtggcagtgggaccctgacattgttgggggttatactgtgcgcggtgcttatcacattatgac |
380037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 675 - 717
Target Start/End: Complemental strand, 379540 - 379498
Alignment:
| Q |
675 |
cagagttggtagtcggatcctttgttttgtttgggtatcgact |
717 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||||||||||||| |
|
|
| T |
379540 |
cagagttggtggtcggaccctttgtattgtttgggtatcgact |
379498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 171
Target Start/End: Original strand, 22176758 - 22176835
Alignment:
| Q |
94 |
ttcttgacaggtggcagtggcatccagacatacatgacggatatactgtgcgaggttcttatcacattatgacaactc |
171 |
Q |
| |
|
|||||||||||| ||||||| |||| ||||| ||||| || ||||||||| |||| | ||||| ||| ||||||||| |
|
|
| T |
22176758 |
ttcttgacaggtagcagtgggatccggacatccatgatggttatactgtgaaaggtgcctatcaaattctgacaactc |
22176835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 3 - 747
Target Start/End: Complemental strand, 32185982 - 32185240
Alignment:
| Q |
3 |
tggagttggaggagaagattgtggatgtgggaagaagaaatgttagaggggtgtaggctattacttgatggtgtatttgtgcaggctaatattcttgaca |
102 |
Q |
| |
|
|||||||||||||| |||||||||| ||| || |||||||||||||||| || |||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32185982 |
tggagttggaggaggagattgtggacgtgtgaggaagaaatgttagaggagtttagggtactacttgatggtgtatttgtgcaggctaatattcttgaca |
32185883 |
T |
|
| Q |
103 |
ggtggcagtggcatccagacatacatgacggatatactgtgcgaggttcttatcacattatgacaactccggtctcttccacttttgacgcaattagaga |
202 |
Q |
| |
|
||||||||||| ||||| |||| ||||| ||||||| ||| |||| ||||||| ||| |||||||| |||| ||||||||| |||||| ||||| |
|
|
| T |
32185882 |
ggtggcagtgggatccaaacattcatgaaggatatattgtcaaaggtgcttatcagattctgacaacttcggtatcttccactgttgacgtgtggagaga |
32185783 |
T |
|
| Q |
203 |
tctcatttggcataagcaggttcgtctaaaggttttcattgttgcttggcgtctgctaaaggacaatctcccaaccataaacaatctcctaaggcgcggc |
302 |
Q |
| |
|
|||||||||||||||||||||| |||||||| | |||||||||||| ||| |||||||||||| |||||||||| ||||||||||| ||||||||| |
|
|
| T |
32185782 |
cctcatttggcataagcaggttcccctaaaggtgtccattgttgcttgacgtttgctaaaggacatgctcccaaccaggaacaatctccttaggcgcggc |
32185683 |
T |
|
| Q |
303 |
atagtgcaagtggcgggggctacgtgtgttgcagggtgcgggcttgaggagtcagcagctcacttgtttattcattgcgacatgttcagttggttgtggc |
402 |
Q |
| |
|
|||||||||| ||||||| || |||||| | ||||||| |||||||||||| || |||||||||||||||||||||| || ||||| | | |||||||| |
|
|
| T |
32185682 |
atagtgcaagaggcggggacttcgtgtgctacagggtgtgggcttgaggagacatcagctcacttgtttattcattgtgaagtgttc-ggtcgttgtggc |
32185584 |
T |
|
| Q |
403 |
agcaaattagagcctggattggagtggcgggagtagacccgtttagcatcattgagcattttctccaatttattcattatacaggttcctcaaaagttcg |
502 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||| ||| ||| ||||| ||| ||||||||||||||||||||||||||||| || || || | || |
|
|
| T |
32185583 |
agcaaattagggcctgg-ttggagtggcgggagtagaaccgcttaccatcactgaccattttctccaatttattcattatacaggatcatctaaggcccg |
32185485 |
T |
|
| Q |
503 |
tcgtttgtttcttcaattactgtggcttcttggtgtttggctgatatggagtgaacgttataacagagtattcaaaaatgtcgaaactcctatctttcag |
602 |
Q |
| |
|
|| |||||||||||| ||| |||||||||||||||||| |||||||||||||| | |||| |||||| ||||| || ||||||||||| || ||| |
|
|
| T |
32185484 |
ctgtgcttttcttcaattattgtagcttcttggtgtttggctaatatggagtgaacgcaacaacaaagtatttaaaaacgttgaaactcctatattacag |
32185385 |
T |
|
| Q |
603 |
cttttagaaaaagtaaaattccattcaatatgatggccgaaggctaataatgccaagtttgtttatggtttgcagagttggtagtcggatcctttgtttt |
702 |
Q |
| |
|
||| |||| |||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||| |||| || |||| |||||| || ||| || |
|
|
| T |
32185384 |
cttctagataaagtaaaattccattcattatggtgggtaaaggctaataatgccaagtttgtttatggtgtgcaaagatggtggtcggaccccttgactt |
32185285 |
T |
|
| Q |
703 |
gtttgggtatcgactaacatgtatttcttgtatatactttgtatg |
747 |
Q |
| |
|
||||| |||||||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
32185284 |
gtttgagtatcgactaacctgtttttcttgtatataacttgtatg |
32185240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 3 - 268
Target Start/End: Complemental strand, 31707031 - 31706765
Alignment:
| Q |
3 |
tggagttggaggagaagattgtggatgtgggaagaagaaatgttagaggggtgtaggctattacttgatggtgtatttgtgcaggctaatattcttgaca |
102 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||| | || |||||||||| ||||| || ||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
31707031 |
tggagttggaggagaagactttggacgtgggaaaaggagatgttagaggagtgtatgcaattacttgatggtgttattgtgcaggctaatattattgaca |
31706932 |
T |
|
| Q |
103 |
ggt-ggcagtggcatccagacatacatgacggatatactgtgcgaggttcttatcacattatgacaactccggtctcttccacttttgacgcaattagag |
201 |
Q |
| |
|
|| |||||||| |||||||||| ||||| || || | |||| ||||| | ||||| ||| ||||||| | ||||||||| || ||||| ||| |||| |
|
|
| T |
31706931 |
tgtgggcagtgggatccagacatgcatgatgggtacattgtgtgaggtgcctatcagattctgacaacactggtctcttcaacagttgacacaacaagag |
31706832 |
T |
|
| Q |
202 |
atctcatttggcataagcaggttcgtctaaaggttttcattgttgcttggcgtctgctaaaggacaa |
268 |
Q |
| |
|
| || | |||||||||||||||| ||| ||||| | |||||| ||| ||||| |||| || ||||| |
|
|
| T |
31706831 |
accttgtatggcataagcaggttcctctgaaggtgtccattgtagctcggcgtatgctgaatgacaa |
31706765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 468 - 747
Target Start/End: Complemental strand, 31706605 - 31706326
Alignment:
| Q |
468 |
caatttattcattatacaggttcctcaaaagttcgtcgtttgtttcttcaattactgtggcttcttggtgtttggctgatatggagtgaacgttataaca |
567 |
Q |
| |
|
|||||||||||||| |||||| ||||| | ||||| | |||| | |||||| | ||||||||| ||||||||||| |||||||||||| |||||| |
|
|
| T |
31706605 |
caatttattcattacacaggtcattcaaaggcgcgtcggtcgtttttccaattaatttggcttctttgtgtttggctgctatggagtgaacacaataaca |
31706506 |
T |
|
| Q |
568 |
gagtattcaaaaatgtcgaaactcctatctttcagcttttagaaaaagtaaaattccattcaatatgatggccgaaggctaataatgccaagtttgttta |
667 |
Q |
| |
|
||||||| || | ||||||||||| || ||||| ||||| ||||| ||||||||||| |||| |||| || ||||||||||||| |||||| | |
|
|
| T |
31706505 |
tgatattcaacaacattgaaactcctattttacagctcttagataaagttaaattccattcgttatggtggctaaaagctaataatgccacgtttgtgtg |
31706406 |
T |
|
| Q |
668 |
tggtttgcagagttggtagtcggatcctttgttttgtttgggtatcgactaacatgtatttcttgtatatactttgtatg |
747 |
Q |
| |
|
|| | ||||| |||| |||||| | ||| |||||||| ||||||||| || | | | |||||||||| |||||||| |
|
|
| T |
31706405 |
cggctctcagagatggtggtcggaccttttaatttgtttgagtatcgactgacctttgatccttgtatatattttgtatg |
31706326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 3 - 125
Target Start/End: Complemental strand, 6937662 - 6937540
Alignment:
| Q |
3 |
tggagttggaggagaagattgtggatgtgggaagaagaaatgttagaggggtgtaggctattacttgatggtgtatttgtgcaggctaatattcttgaca |
102 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||| || ||| || ||| |||||||| |||||||||||||| | ||||||| |||| || || ||| |
|
|
| T |
6937662 |
tggagttggaggagaagattgtgggcgtggaaagaggagatggtaaaggagtgtaggcacttacttgatggtgtttctgtgcagtgtaatgttttttaca |
6937563 |
T |
|
| Q |
103 |
ggtggcagtggcatccagacata |
125 |
Q |
| |
|
||||||||||| |||| |||||| |
|
|
| T |
6937562 |
ggtggcagtgggatccggacata |
6937540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 455 - 552
Target Start/End: Complemental strand, 14497985 - 14497888
Alignment:
| Q |
455 |
tgagcattttctccaatttattcattatacaggttcctcaaaagttcgtcgtttgtttcttcaattactgtggcttcttggtgtttggctgatatgga |
552 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| ||||| | |||||| | ||| | |||||| | ||||||||| ||||||| ||||| |||| |
|
|
| T |
14497985 |
tgagcattttcaccaatttattcattatacaggtcattcaaaggctcgtcgatcgttcttacaattaatctggcttctttgtgtttgactgatgtgga |
14497888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 466 - 551
Target Start/End: Complemental strand, 27317232 - 27317147
Alignment:
| Q |
466 |
tccaatttattcattatacaggttcctcaaaagttcgtcgtttgtttcttcaattactgtggcttcttggtgtttggctgatatgg |
551 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| | ||| || ||| ||||||||||| ||| ||||| |||| |||||||||||| |
|
|
| T |
27317232 |
tccaatttactcattatacaggttcatcaaaggctcgccgaacgttccttcaattactttgggttctttgtgtctggctgatatgg |
27317147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 26513818 - 26513774
Alignment:
| Q |
208 |
tttggcataagcaggttcgtctaaaggttttcattgttgcttggc |
252 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
26513818 |
tttggcataagcaggttcctctaaaggtttccatttttgcttggc |
26513774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 3e-50; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 510 - 747
Target Start/End: Original strand, 15283147 - 15283384
Alignment:
| Q |
510 |
tttcttcaattactgtggcttcttggtgtttggctgatatggagtgaacgttataacagagtattcaaaaatgtcgaaactcctatctttcagcttttag |
609 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| || |||||||||||||| | |||||| |||| ||||| |||||||||| ||| || |||||| ||| |
|
|
| T |
15283147 |
tttcttcaattattgtggattcttggtgtttgactactatggagtgaacgtaacaacagaatatttaaaaacgtcgaaactcttatattacagcttctag |
15283246 |
T |
|
| Q |
610 |
aaaaagtaaaattccattcaatatgatggccgaaggctaataatgccaagtttgtttatggtttgcagagttggtagtcggatcctttgttttgtttggg |
709 |
Q |
| |
|
| |||||||||||||| ||| |||||||| ||||||||||||| ||||||| ||||||||||||||| |||| |||||| || ||| |||||||| |
|
|
| T |
15283247 |
ataaagtaaaattccactcattatgatggttaaaggctaataatgtaaagtttgattatggtttgcagagatggtggtcggaccccttgacttgtttgga |
15283346 |
T |
|
| Q |
710 |
tatcgactaacatgtatttcttgtatatactttgtatg |
747 |
Q |
| |
|
|||||||| || ||| ||||||||||||| |||||||| |
|
|
| T |
15283347 |
tatcgactgacctgtctttcttgtatatattttgtatg |
15283384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 28358177 - 28358017
Alignment:
| Q |
15 |
agaagattgtggatgtgggaagaagaaatgttagaggggtgtaggctattacttgatggtgtatttgtgcaggctaatattcttgacaggtggcagtggc |
114 |
Q |
| |
|
|||||||||||| |||||||||||| ||| |||||| ||||||| | |||||||| ||| |||||| || ||| | || |||||||||||||||| |
|
|
| T |
28358177 |
agaagattgtgggcgtgggaagaagagatggtagaggagtgtaggttgttacttgacaatgtttttgtgtagtctactgtttctgacaggtggcagtggg |
28358078 |
T |
|
| Q |
115 |
atccagacatacatgacggatatactgtgcgaggttcttatcacattatgacaactccggt |
175 |
Q |
| |
|
|||||||| |||| || ||||| ||| |||| ||||||| ||| ||||||||||||| |
|
|
| T |
28358077 |
atccagactctaatgatggttatacagtgagaggggcttatcagattctgacaactccggt |
28358017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 53 - 259
Target Start/End: Complemental strand, 22351 - 22145
Alignment:
| Q |
53 |
gtgtaggctattacttgatggtgtatttgtgcaggctaatattcttgacaggtggcagtggcatccagacatacatgacggatatactgtgcgaggttct |
152 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| || ||||| || || ||||| |||||| | |
|
|
| T |
22351 |
gtgtaggcaattacttgatggtgttattgtgcaggctaatattattgacaggtggcagtgggatccagatattcatgaaggttacactgtccgaggtgca |
22252 |
T |
|
| Q |
153 |
tatcacattatgacaactccggtctcttccacttttgacgcaattagagatctcatttggcataagcaggttcgtctaaaggttttcattgttgcttggc |
252 |
Q |
| |
|
||||| ||| ||||||||| |||||||||||| ||| |||| ||||| || | ||||||||||||| || ||| ||||| || ||||| ||||| | |
|
|
| T |
22251 |
tatcagattctgacaactcaggtctcttccacaactgaagcaacaagagaccttgtatggcataagcaggctcctctcaaggtgtttattgtagcttgac |
22152 |
T |
|
| Q |
253 |
gtctgct |
259 |
Q |
| |
|
||||||| |
|
|
| T |
22151 |
gtctgct |
22145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 510 - 745
Target Start/End: Complemental strand, 21894 - 21659
Alignment:
| Q |
510 |
tttcttcaattactgtggcttcttggtgtttggctgatatggagtgaacgttataacagagtattcaaaaatgtcgaaactcctatctttcagcttttag |
609 |
Q |
| |
|
||||| |||||||| |||||||| |||||||| |||| ||||| |||||| |||||| |||||||| || | ||||||||||| || ||| | |||| |
|
|
| T |
21894 |
tttctccaattactttggcttctgtgtgtttggttgatctggagagaacgtaataacaaggtattcaacaacatagaaactcctattttacagttattag |
21795 |
T |
|
| Q |
610 |
aaaaagtaaaattccattcaatatgatggccgaaggctaataatgccaagtttgtttatggtttgcagagttggtagtcggatcctttgttttgtttggg |
709 |
Q |
| |
|
| |||| ||||| ||||| ||||| |||| || | ||||||||||| |||||| | |||| ||||| |||| |||||| || || || |||||||| |
|
|
| T |
21794 |
atcaagttaaatttcattctatatggtggcttaaagttaataatgccacgtttgtgcacggttctcagagatggtggtcggaccccttattgtgtttggg |
21695 |
T |
|
| Q |
710 |
tatcgactaacatgtatt-tcttgtatatactttgta |
745 |
Q |
| |
|
| | |||| |||| |||| ||||||| |||||||||| |
|
|
| T |
21694 |
tcttgactgacat-tattatcttgtaaatactttgta |
21659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 4e-34; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 53 - 259
Target Start/End: Complemental strand, 40484412 - 40484206
Alignment:
| Q |
53 |
gtgtaggctattacttgatggtgtatttgtgcaggctaatattcttgacaggtggcagtggcatccagacatacatgacggatatactgtgcgaggttct |
152 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| || ||||| || || ||||| |||||| | |
|
|
| T |
40484412 |
gtgtaggcaattacttgatggtgttattgtgcaggctaatattattgacaggtggcagtgggatccagatattcatgaaggttacactgtccgaggtgca |
40484313 |
T |
|
| Q |
153 |
tatcacattatgacaactccggtctcttccacttttgacgcaattagagatctcatttggcataagcaggttcgtctaaaggttttcattgttgcttggc |
252 |
Q |
| |
|
||||| ||| ||||||||| |||||||||||| ||| |||| ||||| || | ||||||||||||| || ||| ||||| || ||||| ||||| | |
|
|
| T |
40484312 |
tatcagattctgacaactcaggtctcttccacaactgaagcaacaagagaccttgtatggcataagcaggctcctctcaaggtgtttattgtagcttgac |
40484213 |
T |
|
| Q |
253 |
gtctgct |
259 |
Q |
| |
|
||||||| |
|
|
| T |
40484212 |
gtctgct |
40484206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 510 - 745
Target Start/End: Complemental strand, 40483955 - 40483720
Alignment:
| Q |
510 |
tttcttcaattactgtggcttcttggtgtttggctgatatggagtgaacgttataacagagtattcaaaaatgtcgaaactcctatctttcagcttttag |
609 |
Q |
| |
|
||||| |||||||| |||||||| |||||||| |||| ||||| |||||| |||||| |||||||| || | ||||||||||| || ||| | |||| |
|
|
| T |
40483955 |
tttctccaattactttggcttctgtgtgtttggttgatctggagagaacgtaataacaaggtattcaacaacatagaaactcctattttacagttattag |
40483856 |
T |
|
| Q |
610 |
aaaaagtaaaattccattcaatatgatggccgaaggctaataatgccaagtttgtttatggtttgcagagttggtagtcggatcctttgttttgtttggg |
709 |
Q |
| |
|
| |||| ||||| ||||| ||||| |||| || | ||||||||||| |||||| | |||| ||||| |||| |||||| || || || |||||||| |
|
|
| T |
40483855 |
atcaagttaaatttcattctatatggtggcttaaagttaataatgccacgtttgtgcacggttctcagagatggtggtcggaccccttattgtgtttggg |
40483756 |
T |
|
| Q |
710 |
tatcgactaacatgtatt-tcttgtatatactttgta |
745 |
Q |
| |
|
| | |||| |||| |||| ||||||| |||||||||| |
|
|
| T |
40483755 |
tcttgactgacat-tattatcttgtaaatactttgta |
40483720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 510 - 720
Target Start/End: Original strand, 32348656 - 32348866
Alignment:
| Q |
510 |
tttcttcaattactgtggcttcttggtgtttggctgatatggagtgaacgttataacagagtattcaaaaatgtcgaaactcctatctttcagcttttag |
609 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||| |||| ||| || |||||| ||||||| || | |||||| || || |||||| ||| |
|
|
| T |
32348656 |
tttcttcaattgatttggcttcttggtgtgtggctgatctggaatgagcgcaataacaagctattcaataacatagaaacttctgatttacagcttctag |
32348755 |
T |
|
| Q |
610 |
aaaaagtaaaattccattcaatatgatggccgaaggctaataatgccaagtttgtttatggtttgcagagttggtagtcggatcctttgttttgtttggg |
709 |
Q |
| |
|
| ||||||||||| || || || |||| ||| ||||| | |||| |||||| || |||| ||||| |||| ||||||||||||| |||||||||| |
|
|
| T |
32348756 |
ataaagtaaaatttcactcgtattggtggctgaaagctaagaccgccatgtttgtgtacggttctcagagatggtggtcggatcctttgatttgtttggg |
32348855 |
T |
|
| Q |
710 |
tatcgactaac |
720 |
Q |
| |
|
||||||||||| |
|
|
| T |
32348856 |
tatcgactaac |
32348866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 9690720 - 9690613
Alignment:
| Q |
5 |
gagttggaggagaagattgtggatgtgggaagaagaaatgttagaggggtgtaggctattacttgatggtgtatttgtgcaggctaatattcttgacagg |
104 |
Q |
| |
|
||||||| ||||| |||||||| ||||||| || || ||| |||| | ||||||||| ||||||||| ||| | ||||||| ||||| || ||||||| |
|
|
| T |
9690720 |
gagttggcggagacgattgtgggtgtgggaggaggagatggtagaagagtgtaggcttttacttgatactgtttgtgtgcagactaatgtttctgacagg |
9690621 |
T |
|
| Q |
105 |
tggcagtg |
112 |
Q |
| |
|
|||||||| |
|
|
| T |
9690620 |
tggcagtg |
9690613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 641 - 717
Target Start/End: Complemental strand, 34104999 - 34104923
Alignment:
| Q |
641 |
gaaggctaataatgccaagtttgtttatggtttgcagagttggtagtcggatcctttgttttgtttgggtatcgact |
717 |
Q |
| |
|
|||||| ||||||||| ||||| ||||||| ||||| |||| |||||| |||||||| |||||||||||||||| |
|
|
| T |
34104999 |
gaaggcgaataatgcctgttttgtatatggttctcagagatggtggtcggaccctttgttatgtttgggtatcgact |
34104923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 33584191 - 33584318
Alignment:
| Q |
3 |
tggagttggaggagaagattgtggatgtgggaagaagaaatgttagaggggtgtaggctattacttgatggtgtatttgtgcaggctaatattcttgaca |
102 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| | ||| |||||| |||||||| |||||| ||||||| ||||||||| || || || ||||| |
|
|
| T |
33584191 |
tggagttggaggagaagattgtgggcgtaggaagaggggatggtagaggagtgtaggcacttacttaatggtgtttttgtgcagtctgatgtttttgacg |
33584290 |
T |
|
| Q |
103 |
ggtggcagtggcatccagacatacatga |
130 |
Q |
| |
|
||||||||||| |||| ||||||||||| |
|
|
| T |
33584291 |
ggtggcagtgggatccggacatacatga |
33584318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 7300974 - 7300919
Alignment:
| Q |
3 |
tggagttggaggagaagattgtggatgtgggaagaagaaatgttagaggggtgtag |
58 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| || || ||| |||||| |||||| |
|
|
| T |
7300974 |
tggagttggaggagaagattgtgggtgtgggaggaggagatggtagaggagtgtag |
7300919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 645 - 718
Target Start/End: Original strand, 37308428 - 37308501
Alignment:
| Q |
645 |
gctaataatgccaagtttgtttatggtttgcagagttggtagtcggatcctttgttttgtttgggtatcgacta |
718 |
Q |
| |
|
|||||||| |||| |||||| || |||| ||||| ||||||||||||| |||| ||||| ||||||| ||||| |
|
|
| T |
37308428 |
gctaataacgccacgtttgtgtacggttctcagagatggtagtcggatcatttgctttgtatgggtattgacta |
37308501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 53 - 259
Target Start/End: Original strand, 31769559 - 31769765
Alignment:
| Q |
53 |
gtgtaggctattacttgatggtgtatttgtgcaggctaatattcttgacaggtggcagtggcatccagacatacatgacggatatactgtgcgaggttct |
152 |
Q |
| |
|
|||||||| ||||||||||| ||| | |||||||||||||||| |||||||| || | ||| ||||||| || ||||| || || ||||||||||| || |
|
|
| T |
31769559 |
gtgtaggcaattacttgatgatgtttctgtgcaggctaatattattgacaggcggtaatgggatccagatattcatgatggttacactgtgcgaggcact |
31769658 |
T |
|
| Q |
153 |
tatcacattatgacaactccggtctcttccacttttgacgcaattagagatctcatttggcataagcaggttcgtctaaaggttttcattgttgcttggc |
252 |
Q |
| |
|
||||| ||| ||||| ||||| | || || || | || |||| |||||| || |||||||||||||| ||| | | ||||| | |||||| ||||||| |
|
|
| T |
31769659 |
tatcagattctgacagctccgatttcctcaacaatagatgcaactagagaactagtttggcataagcagtttcctatgaaggtgtccattgtagcttggc |
31769758 |
T |
|
| Q |
253 |
gtctgct |
259 |
Q |
| |
|
|| |||| |
|
|
| T |
31769759 |
gtttgct |
31769765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 466 - 628
Target Start/End: Original strand, 31769971 - 31770133
Alignment:
| Q |
466 |
tccaatttattcattatacaggttcctcaaaagttcgtcgtttgtttcttcaattactgtggcttcttggtgtttggctgatatggagtgaacgttataa |
565 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | ||| | | ||| ||||||||||| ||||||||| |||| |||||||||||| | |||||| |||| |
|
|
| T |
31769971 |
tccaatttattcattatacaggttcatcaaaggctcgcagatcgttccttcaattactttggcttctttgtgtctggctgatatggggagaacgtaataa |
31770070 |
T |
|
| Q |
566 |
cagagtattcaaaaatgtcgaaactcctatctttcagcttttagaaaaagtaaaattccattc |
628 |
Q |
| |
|
|| | || || || || |||| ||||| || ||||||||||| ||||||||||| ||||| |
|
|
| T |
31770071 |
taggatttttaacaacgtagaaatgcctattttacagcttttagataaagtaaaatttcattc |
31770133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 112
Target Start/End: Original strand, 16296945 - 16297054
Alignment:
| Q |
3 |
tggagttggaggagaagattgtggatgtgggaagaagaaatgttagaggggtgtaggctattacttgatggtgtatttgtgcaggctaatattcttgaca |
102 |
Q |
| |
|
||||||||||| |||||||||||| ||||| ||||||| |||||||||| ||||| | | |||||||| ||| |||||||| ||||| || ||||| |
|
|
| T |
16296945 |
tggagttggagaagaagattgtgggtgtggaaagaagacatgttagaggagtgtaagattttacttgacactgttgttgtgcagtctaatgtttctgaca |
16297044 |
T |
|
| Q |
103 |
ggtggcagtg |
112 |
Q |
| |
|
|||||||||| |
|
|
| T |
16297045 |
ggtggcagtg |
16297054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 618 - 718
Target Start/End: Complemental strand, 44433100 - 44433000
Alignment:
| Q |
618 |
aaattccattcaatatgatggccgaaggctaataatgccaagtttgtttatggtttgcagagttggtagtcggatcctttgttttgtttgggtatcgact |
717 |
Q |
| |
|
|||| ||||||| | ||||||| |||||||||||||||| ||||| ||||| ||||| ||||| |||| ||||| ||||||||||||||||||||| |
|
|
| T |
44433100 |
aaataccattcattgtgatggcttaaggctaataatgccatttttgtgcatggtacgcagacttggtggtcgaatcctctgttttgtttgggtatcgact |
44433001 |
T |
|
| Q |
718 |
a |
718 |
Q |
| |
|
| |
|
|
| T |
44433000 |
a |
44433000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 510 - 720
Target Start/End: Original strand, 30802122 - 30802332
Alignment:
| Q |
510 |
tttcttcaattactgtggcttcttggtgtttggctgatatggagtgaacgttataacagagtattcaaaaatgtcgaaactcctatctttcagcttttag |
609 |
Q |
| |
|
||||||||||| | ||||| |||||||| |||||||| |||| |||||| ||||||| ||||||| || | |||||| ||| || |||||| || |
|
|
| T |
30802122 |
tttcttcaattgatttggctgcttggtgtgtggctgatctggaatgaacgcaataacaggctattcaataacatagaaacttctaatttacagcttcaag |
30802221 |
T |
|
| Q |
610 |
aaaaagtaaaattccattcaatat-gatggccgaaggctaataatgccaagtttgtttatggtttgcagagttggtagtcggatcctttgttttgtttgg |
708 |
Q |
| |
|
| |||||||| || || || ||| | |||| ||| |||||||| |||| |||||| || |||| ||||| ||| |||||| |||||| ||||||||| |
|
|
| T |
30802222 |
agaaagtaaattttcactcg-tatcggtggctgaaagctaataacgccacgtttgtgtacggttctcagagacggtggtcggaccctttgatttgtttgg |
30802320 |
T |
|
| Q |
709 |
gtatcgactaac |
720 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30802321 |
gtatcgactaac |
30802332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 8722964 - 8723110
Alignment:
| Q |
3 |
tggagttggaggagaagattgtggatgtgggaagaagaaatgttagaggggtgtaggctattacttgatggtgtatttgtgcaggctaatattcttgaca |
102 |
Q |
| |
|
||||||||| ||||| | |||||| ||| || || || ||| |||||| ||||||| | |||||||| ||| |||||||| ||||| || ||||| |
|
|
| T |
8722964 |
tggagttggcggagacgtttgtgggcgtgagaggaggagatggtagaggagtgtaggattttacttgacaatgttgttgtgcagcctaatgtttctgaca |
8723063 |
T |
|
| Q |
103 |
ggtggcagtggcatccagacatacatgacggatatactgtgcgaggt |
149 |
Q |
| |
|
||||||||||| |||||||||| ||||| ||||| || ||| ||||| |
|
|
| T |
8723064 |
ggtggcagtgggatccagacatccatgatggatacacagtgagaggt |
8723110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 510 - 628
Target Start/End: Original strand, 44846125 - 44846243
Alignment:
| Q |
510 |
tttcttcaattactgtggcttcttggtgtttggctgatatggagtgaacgttataacagagtattcaaaaatgtcgaaactcctatctttcagcttttag |
609 |
Q |
| |
|
||||| |||||||| |||||||| || ||||| |||| |||||||||||| |||||| |||||||| || | ||||||||||| || ||| | |||| |
|
|
| T |
44846125 |
tttctacaattactttggcttctgagtctttggttgatctggagtgaacgtaataacatcgtattcaacaacatagaaactcctattttacagttattag |
44846224 |
T |
|
| Q |
610 |
aaaaagtaaaattccattc |
628 |
Q |
| |
|
| |||| ||||| ||||| |
|
|
| T |
44846225 |
atcaagttaaatttcattc |
44846243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 535 - 710
Target Start/End: Original strand, 64122 - 64297
Alignment:
| Q |
535 |
gtgtttggctgatatggagtgaacgttataacagagtattcaaaaatgtcgaaactcctatctttcagcttttagaaaaagtaaaattccattcaatatg |
634 |
Q |
| |
|
||||||||||||||||||||||||| |||| | ||||||| ||| | ||||||||||| | ||||||||||| || | ||||| ||||| |||| |
|
|
| T |
64122 |
gtgtttggctgatatggagtgaacggaataataagatattcaataatatagaaactcctattatacagcttttagataatgctaaatttcattctttatg |
64221 |
T |
|
| Q |
635 |
atggccgaaggctaataatgccaagtttgtttatggtttgcagagttggtagtcggatcctttgttttgtttgggt |
710 |
Q |
| |
|
|||| ||||| |||||||||| ||||| || |||| ||||| || | |||||||||||| ||||||||||| |
|
|
| T |
64222 |
gtggcttaaggcaaataatgccacatttgtgtacggttctcagagatgatggtcggatcctttactttgtttgggt |
64297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 9511077 - 9510976
Alignment:
| Q |
7 |
gttggaggagaagattgtggatgtgggaagaagaaatgttagaggggtgtaggctattacttgatggtgtatttgtgcaggctaatattcttgacaggtg |
106 |
Q |
| |
|
||||||||||||| ||| || ||||||| || || |||||||||| |||||||| ||| ||| ||||||| || ||||| |||||||| ||||||| || |
|
|
| T |
9511077 |
gttggaggagaaggttgagggtgtgggaggaggagatgttagaggagtgtaggcaattgcttaatggtgttgttttgcagcctaatatttttgacagatg |
9510978 |
T |
|
| Q |
107 |
gc |
108 |
Q |
| |
|
|| |
|
|
| T |
9510977 |
gc |
9510976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 2978 - 3031
Alignment:
| Q |
198 |
agagatctcatttggcataagcaggttcgtctaaaggttttcattgttgcttgg |
251 |
Q |
| |
|
|||||||| ||||||||||||||||| | | | |||||||| |||||||||||| |
|
|
| T |
2978 |
agagatcttatttggcataagcaggtacctttgaaggtttttattgttgcttgg |
3031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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