View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15429_low_10 (Length: 331)
Name: NF15429_low_10
Description: NF15429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15429_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 32590734 - 32590436
Alignment:
| Q |
20 |
gaattagagataatgtttctcatacataattgatatttcattttatatttcattctaatttcttttttgaaacataggggaaaggaagatccagcaacat |
119 |
Q |
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| T |
32590734 |
gaattagtgataatgtttctcatacataattgatatttcattttctattttattatacttgcttttttgaaacataggggaaaggaagatccagcaacat |
32590635 |
T |
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| Q |
120 |
gggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtcaaattaatatgataactcacattccaacattataca |
219 |
Q |
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| T |
32590634 |
gggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtaaaattaatatgataattcacattctcacattatacg |
32590535 |
T |
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| Q |
220 |
atgtcactttttgcgtaataattgagtcatgaaagaaaagaaaaaatcaattattttcttcattttcctatattatgaccaactaactttattcctccct |
319 |
Q |
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| T |
32590534 |
atgtctctttttgcataataattgaatcatgaaagaaaag--aaaaccaattattttcttcattttcctatattatgaccaactaactttattcctccct |
32590437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 28 - 203
Target Start/End: Complemental strand, 32601197 - 32601022
Alignment:
| Q |
28 |
gataatgtttctcatacataattgatatttcattttatatttcattctaatttcttttttgaaacataggggaaaggaagatccagcaacatgggccaaa |
127 |
Q |
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| T |
32601197 |
gataatgtttctcatacataattgatatttcattttatatttcattataatttcttttttgaaacataggggatgggaagatcctgctacatgggccaaa |
32601098 |
T |
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| Q |
128 |
agtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggtcaaattaatatgataactcac |
203 |
Q |
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| T |
32601097 |
agtgtgggaaatagttggagaacaacaggagatattgaagataactggaataggtaaaattaatatgataactcac |
32601022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 32600946 - 32600892
Alignment:
| Q |
260 |
aaaaaatcaattattttcttcattttcctatattatgaccaactaactttattcc |
314 |
Q |
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| T |
32600946 |
aaaaaatcaattattttcttcattttcttatattatgaccaactaactttattcc |
32600892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 24883380 - 24883434
Alignment:
| Q |
128 |
agtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggt |
182 |
Q |
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| T |
24883380 |
agtgtgggaaatagttggagaacaacatcagatatcgaagataaatgggataggt |
24883434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 34594183 - 34594091
Alignment:
| Q |
90 |
aacataggggaaaggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggt |
182 |
Q |
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| T |
34594183 |
aacataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggt |
34594091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 34578540 - 34578398
Alignment:
| Q |
33 |
tgtttctcatacataattgatatttcattttatatttcattctaatttcttttttgaaacataggggaaaggaagatccagcaacatgggccaaaagtgt |
132 |
Q |
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| T |
34578540 |
tgtttctcatacataaacaatatttcattttctatttctcacttaattcttttctaaaattcaggggatgggaagatcctgcaacgtgggccaaaagtgt |
34578441 |
T |
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| Q |
133 |
gggaaatagttggagaacaacaggagatattaaagataattgg |
175 |
Q |
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| T |
34578440 |
gggaaatagttggagaaccacgggtgatatagaagataattgg |
34578398 |
T |
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