View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15429_low_2 (Length: 702)

Name: NF15429_low_2
Description: NF15429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15429_low_2
NF15429_low_2
[»] scaffold0856 (1 HSPs)
scaffold0856 (243-665)||(4719-5140)
[»] chr1 (8 HSPs)
chr1 (177-408)||(30270472-30270703)
chr1 (269-506)||(30272329-30272565)
chr1 (518-665)||(30272614-30272761)
chr1 (330-506)||(31141940-31142116)
chr1 (433-492)||(27402441-27402500)
chr1 (403-442)||(34470027-34470066)
chr1 (413-486)||(27981698-27981771)
chr1 (403-439)||(6760095-6760131)
[»] chr7 (10 HSPs)
chr7 (403-507)||(32096729-32096833)
chr7 (403-507)||(39478458-39478562)
chr7 (403-507)||(41706620-41706724)
chr7 (403-506)||(32089257-32089360)
chr7 (403-506)||(39128484-39128587)
chr7 (403-506)||(41812162-41812265)
chr7 (403-507)||(32093013-32093117)
chr7 (403-506)||(32087902-32088005)
chr7 (20-121)||(21896747-21896848)
chr7 (460-492)||(32089079-32089111)
[»] chr8 (2 HSPs)
chr8 (403-506)||(21634798-21634901)
chr8 (425-492)||(5515537-5515604)
[»] chr6 (3 HSPs)
chr6 (403-506)||(26217226-26217329)
chr6 (403-481)||(7618947-7619025)
chr6 (411-482)||(18871931-18872003)
[»] chr3 (7 HSPs)
chr3 (403-506)||(38044513-38044616)
chr3 (403-506)||(48837988-48838091)
chr3 (411-492)||(50152363-50152444)
chr3 (406-492)||(50903990-50904076)
chr3 (414-492)||(50916160-50916242)
chr3 (404-440)||(50823392-50823428)
chr3 (404-440)||(50852433-50852469)
[»] chr2 (2 HSPs)
chr2 (421-492)||(32271350-32271421)
chr2 (403-492)||(43741445-43741534)
[»] chr4 (3 HSPs)
chr4 (449-492)||(8762986-8763029)
chr4 (420-492)||(7777912-7777985)
chr4 (420-456)||(7772341-7772377)
[»] chr5 (2 HSPs)
chr5 (414-445)||(18352651-18352682)
chr5 (403-437)||(17013885-17013919)


Alignment Details
Target: scaffold0856 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 243 - 665
Target Start/End: Complemental strand, 5140 - 4719
Alignment:
Q  243 gatatattaaagtgattgattagttagtaagtgcagtgcatgtctgtattttatttcctagttgtctaacgtacgcacgcatgcaccaaataagtcccat 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    ||||||||||||||     
T  5140 gatatattaaagtgattgattagttagtaagtgcagtgcatgtctgtattttatttccttgttgtctaacgtacgcacgca----ccaaataagtcccac 5045  T
Q  343 atcggttaacctttgcaattatttagcttttatataacacgaaaataccttcttttagtatcccttcagggacatccgataaaattggaatgatacagag 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||    
T  5044 atcggttaacctttgcaattatttagcttttatataacacgaaaataccttcttctagtatcccttcggggacattcgataaaattggaatgatacagag 4945  T
Q  443 aagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatgacccaaattattttgtacnnnnnnngattcccttcgttggctgcagttat 542  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  4944 aagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatgacccaaattattttgtactttttttgattcccttcgttggctgcagttat 4845  T
Q  543 tggcttcttttt---tcatcatcccatgtgcttcgctatgatgtttgaaaacaaacttgactggcttttcactaatcttactcatggatgcatagtgtct 639  Q
    ||||||||||||   |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4844 tggcttcttttttcatcatcatcccatgtgcttcgctatgatgttcgaaaacaaacttgactggcttttcactaatcttactcatggatgcatagtgtct 4745  T
Q  640 cactatcatatttttggttctctgtg 665  Q
    ||||||||||||||||||||||||||    
T  4744 cactatcatatttttggttctctgtg 4719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 177 - 408
Target Start/End: Complemental strand, 30270703 - 30270472
Alignment:
Q  177 tgtatattagttttcacttttcaagagaatggagaaaccgaacgaaaaaaccttcatttattctgcgatatattaaagtgattgattagttagtaagtgc 276  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30270703 tgtatagtagttttcacttttcaagagaatggagaaaccgaacgaacaaaccttcatttattctgcgatatattaaagtgattgattagttagtaagtgc 30270604  T
Q  277 agtgcatgtctgtattttatttcctagttgtctaacgtacgcacgcatgcaccaaataagtcccatatcggttaacctttgcaattatttagcttttata 376  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30270603 agtgcatgtctgtattttatttgctagttgtctaacgtacgcacgcacgcaccaaataagtcccacatcggttaacctttgcaattatttagcttttata 30270504  T
Q  377 taacacgaaaataccttcttttagtatccctt 408  Q
    ||||||| |||||||||||| |||||||||||    
T  30270503 taacacggaaataccttcttctagtatccctt 30270472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 269 - 506
Target Start/End: Original strand, 30272329 - 30272565
Alignment:
Q  269 gtaagtgcagtgcatgtctgtattttatttcctagttgtctaacgtacgcacgcatgcaccaaataagtcccatatcggttaacctttgcaattatttag 368  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  30272329 gtaagtgcagtgcatgtctgtattttatttcctagttgtctcacgttcgcacgcacgcaccaattaagtcccacatcggttaacctttgcaattatttag 30272428  T
Q  369 cttttatataacacgaaaataccttcttttagtatcccttcagggacatccgataaaattggaatgatacagagaagatcagcatggcccatgcgcaagg 468  Q
    ||||||||||||||| |||||||||||| || ||||||||||  ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||      
T  30272429 cttttatataacacggaaataccttcttctattatcccttcaatgacatccgataaaattggaatgatacagagaagattagcatgg-ccatgcgcaaca 30272527  T
Q  469 atgacacgcacaaatcgagaaatgacccaaattatttt 506  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30272528 atgacacgcacaaatcgagaaatgacccaaattatttt 30272565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 518 - 665
Target Start/End: Original strand, 30272614 - 30272761
Alignment:
Q  518 gattcccttcgttggctgcagttattggcttcttttttcatcatcccatgtgcttcgctatgatgtttgaaaacaaacttgactggcttttcactaatct 617  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  30272614 gattcccttcgttggctgcggttattggcttcttttttcatcatcccatgagcttcgctatgatgtttgaaaacaaacttgactggcttttcactaatct 30272713  T
Q  618 tactcatggatgcatagtgtctcactatcatatttttggttctctgtg 665  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30272714 tactcatggatgcatagtgtctcactatcatatttttggttctctgtg 30272761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 330 - 506
Target Start/End: Complemental strand, 31142116 - 31141940
Alignment:
Q  330 aaataagtcccatatcggttaacctttgcaattatttagcttttatataacacgaaaataccttcttttagtatcccttcagggacatccgataaaattg 429  Q
    |||||||||||| |||||||||| |    | |||||||   |||||||||| || |||| |  |||| || | ||||||| |||||||||||||||||||    
T  31142116 aaataagtcccacatcggttaacatacatatttatttaatgtttatataacgcgcaaatgctctcttctattgtcccttcggggacatccgataaaattg 31142017  T
Q  430 gaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatgacccaaattatttt 506  Q
    ||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||  ||||||| ||||    
T  31142016 gaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaattttttt 31141940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 433 - 492
Target Start/End: Complemental strand, 27402500 - 27402441
Alignment:
Q  433 tgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatg 492  Q
    ||||||||| || || |||||||||| ||| |||||||||||||||||||||||||||||    
T  27402500 tgatacagaaaaaattagcatggcccctgcacaaggatgacacgcacaaatcgagaaatg 27402441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 403 - 442
Target Start/End: Original strand, 34470027 - 34470066
Alignment:
Q  403 tcccttcagggacatccgataaaattggaatgatacagag 442  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  34470027 tcccttcggggacatccgataaaattggaatgatacagag 34470066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 413 - 486
Target Start/End: Original strand, 27981698 - 27981771
Alignment:
Q  413 gacatccgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcga 486  Q
    ||||||||||||||||| ||  ||| ||||||||||||||||  || |  |||||||||||| |||||||||||    
T  27981698 gacatccgataaaattgaaacaatatagagaagatcagcatgagccctatgcaaggatgacatgcacaaatcga 27981771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 6760095 - 6760131
Alignment:
Q  403 tcccttcagggacatccgataaaattggaatgataca 439  Q
    |||||||||||||||||||||||||||||| ||||||    
T  6760095 tcccttcagggacatccgataaaattggaacgataca 6760131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 403 - 507
Target Start/End: Complemental strand, 32096833 - 32096729
Alignment:
Q  403 tcccttcagggacatccgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatgacccaaatta 502  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||  |||||||     
T  32096833 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaattt 32096734  T
Q  503 ttttg 507  Q
    |||||    
T  32096733 ttttg 32096729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 403 - 507
Target Start/End: Original strand, 39478458 - 39478562
Alignment:
Q  403 tcccttcagggacatccgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatgacccaaatta 502  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||  |||||||     
T  39478458 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaattt 39478557  T
Q  503 ttttg 507  Q
    |||||    
T  39478558 ttttg 39478562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 403 - 507
Target Start/End: Complemental strand, 41706724 - 41706620
Alignment:
Q  403 tcccttcagggacatccgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatgacccaaatta 502  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||  |||||||     
T  41706724 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaattt 41706625  T
Q  503 ttttg 507  Q
    |||||    
T  41706624 ttttg 41706620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 403 - 506
Target Start/End: Complemental strand, 32089360 - 32089257
Alignment:
Q  403 tcccttcagggacatccgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatgacccaaatta 502  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||  |||||||     
T  32089360 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaattt 32089261  T
Q  503 tttt 506  Q
    ||||    
T  32089260 tttt 32089257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 403 - 506
Target Start/End: Complemental strand, 39128587 - 39128484
Alignment:
Q  403 tcccttcagggacatccgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatgacccaaatta 502  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||  |||||||     
T  39128587 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaattt 39128488  T
Q  503 tttt 506  Q
    ||||    
T  39128487 tttt 39128484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 403 - 506
Target Start/End: Original strand, 41812162 - 41812265
Alignment:
Q  403 tcccttcagggacatccgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatgacccaaatta 502  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||  |||||||     
T  41812162 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaattt 41812261  T
Q  503 tttt 506  Q
    ||||    
T  41812262 tttt 41812265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 403 - 507
Target Start/End: Complemental strand, 32093117 - 32093013
Alignment:
Q  403 tcccttcagggacatccgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatgacccaaatta 502  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||  |||||||     
T  32093117 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgtgcaaggatgacacgcacaaatcgagaaatggtccaaattt 32093018  T
Q  503 ttttg 507  Q
    |||||    
T  32093017 ttttg 32093013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 403 - 506
Target Start/End: Complemental strand, 32088005 - 32087902
Alignment:
Q  403 tcccttcagggacatccgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatgacccaaatta 502  Q
    ||||||| |||||||| ||||||||||||| |||||||||||||| | |||||||| ||| |||||||||||||||||||||||||||||  |||||||     
T  32088005 tcccttcggggacatctgataaaattggaacgatacagagaagattaacatggcccctgcacaaggatgacacgcacaaatcgagaaatggtccaaattt 32087906  T
Q  503 tttt 506  Q
    ||||    
T  32087905 tttt 32087902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 21896747 - 21896848
Alignment:
Q  20 ttcccctctcgcttggtaattataaattgacgtgtttacggctcaacgaccaaggggaaggtgctgggtttacgggtggcattacccttatagcatcaat 119  Q
    ||||||||||||||||||| | |||  |||||||||||||||||||| ||||||||| || || ||||||| ||||| |||||||| | |||||||||||    
T  21896747 ttcccctctcgcttggtaactctaatgtgacgtgtttacggctcaacaaccaaggggtagatgatgggttttcgggtagcattaccatcatagcatcaat 21896846  T
Q  120 ga 121  Q
    ||    
T  21896847 ga 21896848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 460 - 492
Target Start/End: Original strand, 32089079 - 32089111
Alignment:
Q  460 tgcgcaaggatgacacgcacaaatcgagaaatg 492  Q
    |||||||||||||||||||||||||||||||||    
T  32089079 tgcgcaaggatgacacgcacaaatcgagaaatg 32089111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 9e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 403 - 506
Target Start/End: Complemental strand, 21634901 - 21634798
Alignment:
Q  403 tcccttcagggacatccgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatgacccaaatta 502  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||  |||||||     
T  21634901 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaattt 21634802  T
Q  503 tttt 506  Q
    ||||    
T  21634801 tttt 21634798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 425 - 492
Target Start/End: Original strand, 5515537 - 5515604
Alignment:
Q  425 aattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatg 492  Q
    |||||||| |||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||    
T  5515537 aattggaacgatacagagaagattagcatggcccttgcgcaaagatgacacgcacaaatcgagaaatg 5515604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 9e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 403 - 506
Target Start/End: Complemental strand, 26217329 - 26217226
Alignment:
Q  403 tcccttcagggacatccgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatgacccaaatta 502  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||  |||||||     
T  26217329 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaattt 26217230  T
Q  503 tttt 506  Q
    ||||    
T  26217229 tttt 26217226  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 403 - 481
Target Start/End: Complemental strand, 7619025 - 7618947
Alignment:
Q  403 tcccttcagggacatccgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaa 481  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||  |||||||||| ||||||||||||||    
T  7619025 tcccttcggggacatccgataaaattggaatgatacagagaagattagcatgatccatgcgcaaagatgacacgcacaa 7618947  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 411 - 482
Target Start/End: Complemental strand, 18872003 - 18871931
Alignment:
Q  411 gggacatccgataaaattggaatgatacagagaagatcagcatgg-cccatgcgcaaggatgacacgcacaaa 482  Q
    |||||||| |||||| ||| ||||||||||| ||||| ||||||| ||| ||||||| |||||||||||||||    
T  18872003 gggacatctgataaagttgaaatgatacagacaagattagcatggccccttgcgcaaagatgacacgcacaaa 18871931  T

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Target: chr3 (Bit Score: 76; Significance: 9e-35; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 403 - 506
Target Start/End: Complemental strand, 38044616 - 38044513
Alignment:
Q  403 tcccttcagggacatccgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatgacccaaatta 502  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||  |||||||     
T  38044616 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaattt 38044517  T
Q  503 tttt 506  Q
    ||||    
T  38044516 tttt 38044513  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 403 - 506
Target Start/End: Original strand, 48837988 - 48838091
Alignment:
Q  403 tcccttcagggacatccgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatgacccaaatta 502  Q
    ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||  |||||||     
T  48837988 tcccttcggggacatccgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatggtccaaattt 48838087  T
Q  503 tttt 506  Q
    ||||    
T  48838088 tttt 48838091  T

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Target: chr3; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 411 - 492
Target Start/End: Original strand, 50152363 - 50152444
Alignment:
Q  411 gggacatccgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatg 492  Q
    |||||||| ||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  50152363 gggacatctgataaaattggaacgatacagagaagattagcatggcccctgcgcaaggatgacacgcacaaatcgagaaatg 50152444  T

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Target: chr3; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 406 - 492
Target Start/End: Original strand, 50903990 - 50904076
Alignment:
Q  406 cttcagggacatccgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatg 492  Q
    |||| |||||||||||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||| ||||||||||    
T  50903990 cttcggggacatccgataaaattggaacgatacagagaagattagcaaggcccctgcgcaaggatgacacgcacaattcgagaaatg 50904076  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 414 - 492
Target Start/End: Complemental strand, 50916242 - 50916160
Alignment:
Q  414 acatccgataaaattggaatgatacagagaagatcagc----atggcccatgcgcaaggatgacacgcacaaatcgagaaatg 492  Q
    ||||||||||||||||||| |||| |||||||||  ||    ||||||| ||| |||||||||||||||||||| ||||||||    
T  50916242 acatccgataaaattggaacgatatagagaagattggcatggatggcccttgcacaaggatgacacgcacaaattgagaaatg 50916160  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 404 - 440
Target Start/End: Original strand, 50823392 - 50823428
Alignment:
Q  404 cccttcagggacatccgataaaattggaatgatacag 440  Q
    ||||||||||||||||||||||||||||| |||||||    
T  50823392 cccttcagggacatccgataaaattggaacgatacag 50823428  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 404 - 440
Target Start/End: Complemental strand, 50852469 - 50852433
Alignment:
Q  404 cccttcagggacatccgataaaattggaatgatacag 440  Q
    ||||||||||||||||||||||||||||| |||||||    
T  50852469 cccttcagggacatccgataaaattggaacgatacag 50852433  T

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Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 421 - 492
Target Start/End: Complemental strand, 32271421 - 32271350
Alignment:
Q  421 ataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatg 492  Q
    |||||||||||| |||||| ||||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  32271421 ataaaattggaacgatacaaagaagattatcatggcccctgcgcaaggatgacacgcacaaatcgagaaatg 32271350  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 403 - 492
Target Start/End: Original strand, 43741445 - 43741534
Alignment:
Q  403 tcccttcagggacatccgataaaattggaatgatacagagaagatcagcatggcccatgcgcaaggatgacacgcacaaatcgagaaatg 492  Q
    ||||||||||||||||||||||||||  ||  ||||| ||||||| | |||||| | ||| |||||||||||||||| ||||||||||||    
T  43741445 tcccttcagggacatccgataaaattaaaacaatacatagaagattaacatggctcctgcacaaggatgacacgcaccaatcgagaaatg 43741534  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 449 - 492
Target Start/End: Original strand, 8762986 - 8763029
Alignment:
Q  449 agcatggcccatgcgcaaggatgacacgcacaaatcgagaaatg 492  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  8762986 agcatggcccctgcgcaaggatgacacgcacaaatcgagaaatg 8763029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 420 - 492
Target Start/End: Complemental strand, 7777985 - 7777912
Alignment:
Q  420 gataaaattggaatgatacagagaagatcagcatggc-ccatgcgcaaggatgacacgcacaaatcgagaaatg 492  Q
    ||||||||||||| |||||||||||||| |||||||| ||  ||| ||||||| || ||| |||||||||||||    
T  7777985 gataaaattggaacgatacagagaagattagcatggcacccggcgtaaggatggcaagcataaatcgagaaatg 7777912  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 420 - 456
Target Start/End: Complemental strand, 7772377 - 7772341
Alignment:
Q  420 gataaaattggaatgatacagagaagatcagcatggc 456  Q
    ||||||||||||| |||||||||||||| ||||||||    
T  7772377 gataaaattggaacgatacagagaagattagcatggc 7772341  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 414 - 445
Target Start/End: Original strand, 18352651 - 18352682
Alignment:
Q  414 acatccgataaaattggaatgatacagagaag 445  Q
    ||||||||||||||||||||||||||||||||    
T  18352651 acatccgataaaattggaatgatacagagaag 18352682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 403 - 437
Target Start/End: Original strand, 17013885 - 17013919
Alignment:
Q  403 tcccttcagggacatccgataaaattggaatgata 437  Q
    |||||||||||||||||||||||||||||| ||||    
T  17013885 tcccttcagggacatccgataaaattggaacgata 17013919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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