View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15429_low_3 (Length: 545)
Name: NF15429_low_3
Description: NF15429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15429_low_3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 18 - 545
Target Start/End: Complemental strand, 33931614 - 33931087
Alignment:
| Q |
18 |
acaataggacagaaagttgtttgattagtaacatcaaagcaagctgtcaaagtacaaatttagcttgcatgttcagaatatataatttcatgaaaactac |
117 |
Q |
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| T |
33931614 |
acaataggacagaaagttgtttgattagtaacatcaaagcaagctgtcaaagtacaaatttagcttgcatgttcagaatatataatttcatgaaaactac |
33931515 |
T |
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| Q |
118 |
ttggagatatccttatcaaattattaaagttgaaagcaagtaagttgtaactatagcttgaaaaggaatgatcagatgaacagttatttgaggggctaaa |
217 |
Q |
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| T |
33931514 |
ttggagatatccttatcaaattattaaagttgaaagcaagtaagttgtaactatagcttgaaaaggaatgatcagatgaacagttatttgaggggctaaa |
33931415 |
T |
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| Q |
218 |
aatatttggtcccttctcttatataaacagtaattgattcatgatattgtgtagcttatggttcatatttacctgttgctctcacaaagttgnnnnnnnn |
317 |
Q |
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| T |
33931414 |
aatatttggtcccttctcttatataaacagtaattgattcatgatattgtgtagcttatggttcatatttacctgttgctctcacaaagttgtttttttt |
33931315 |
T |
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| Q |
318 |
aactactagtagtgtggtccatacattgtgctaccaataatgtagcatcttgcttatataaacatcatctatttccttcattttctctccatagaatcca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33931314 |
aactactagtagtgtggtccatacattgtgctaccaataatgtagcatcttgcttatataaacatcatctatttccttcattttctctccatagaatcca |
33931215 |
T |
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| Q |
418 |
agttactctatgattatttggtacctgtcttatcaatttcaatgttggaagaaaggatgatgatatcaatggtggggttaaagactatgattgacaaatc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33931214 |
agttactctatgattatttggtacctgtcttatcaatttcaatgttggaagaaaggatgatgatatcaatggtggggttaaagactatgattgacaaatc |
33931115 |
T |
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| Q |
518 |
cttaaagtgatatttaaataaaatatct |
545 |
Q |
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| T |
33931114 |
cttaaagtgatatttaaataaaatatct |
33931087 |
T |
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