View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15429_low_4 (Length: 460)
Name: NF15429_low_4
Description: NF15429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15429_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 216 - 445
Target Start/End: Complemental strand, 5787739 - 5787510
Alignment:
| Q |
216 |
agaaaaccctaaccctagtcttgttcatgttcctggacccacactcccttcttaccaaacagtaccttcagcacacatgtcagctactgcattgttgcag |
315 |
Q |
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| T |
5787739 |
agaaaaccctaaccctagtcttgttcatgtttctggacccacactcccttcttaccaaacagtaccttcggcacacatgtcagctactgcattgttgcag |
5787640 |
T |
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| Q |
316 |
aaagcagctcaaatgggtgcaacaatgaatagaagtggttctgcttcttcacctgctatgaatatcaaaacccaccaagttgattctctcaataatgtct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5787639 |
aaagcagctcaaatgggtgcaacaatgaatagaagtggttctgcttcttcacctgctatgaatatcaagacccaccaagttgattctctcaataatgtct |
5787540 |
T |
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| Q |
416 |
ctggtaattttggtttgaatttgttgtcat |
445 |
Q |
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| T |
5787539 |
ctggtaattttggtttgaatttgttgtcat |
5787510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 33 - 169
Target Start/End: Complemental strand, 5787922 - 5787786
Alignment:
| Q |
33 |
catgataaatctacaaaaccaattcaataatcctcaacaagatcttcataatttcccattattgaaaaaagagcaacataatcaaagttttaacctttct |
132 |
Q |
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| T |
5787922 |
catgataaatctacaaaaccaattcaataatcctcaacaagatcttcataatttcccattattgaaaaaagagcaacataatcaaagttttaacctttct |
5787823 |
T |
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| Q |
133 |
gaaattccaccttggcttggcccacataatgttgata |
169 |
Q |
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| T |
5787822 |
gaaattccaccttggcttggcccacataatgttgata |
5787786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 42899263 - 42899312
Alignment:
| Q |
289 |
cacatgtcagctactgcattgttgcagaaagcagctcaaatgggtgcaac |
338 |
Q |
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| T |
42899263 |
cacatgtcagctacagcattgttacagaaagcagctcagatgggtgcaac |
42899312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 338
Target Start/End: Original strand, 36990851 - 36990900
Alignment:
| Q |
289 |
cacatgtcagctactgcattgttgcagaaagcagctcaaatgggtgcaac |
338 |
Q |
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||||||||||| ||||||||| | || ||||| ||||||||||||||||| |
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| T |
36990851 |
cacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaac |
36990900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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