View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15429_low_5 (Length: 426)
Name: NF15429_low_5
Description: NF15429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15429_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 50340624 - 50340213
Alignment:
| Q |
1 |
attacatagataacacaataataaataatctaggcaatgtagacttttccaattcaaacacaattgtttaacatgaaagcaatttatccgaaaaatagcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50340624 |
attacatagataacacaataataaataatctaggcaatgtagacttttccaattcaaacacaattgtttaacatgaaagcaatttatccgaaaaatagcc |
50340525 |
T |
|
| Q |
101 |
ctcgagttaaaaaatcagaaactgagattaatggatagagtcctaagactaaatgtgatatgatcttaaaaaatgtttccaagtgagagacatccctcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50340524 |
ctcgagttaaaaaatcagaaactgagattaatggatagagtcctaagactaaatgtgatatgatcttaaaaaatgtttacaagtgagagacatccctcaa |
50340425 |
T |
|
| Q |
201 |
cttacaatttggtctagagaggttggataactcaaatttcacaagtcggtttagggaggttagataattcaaattctaagattagagtctgtaaaagatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50340424 |
cttacaatttggtctagagaggttggataactcaaatttcacaagtcggtttagggaggttagataattcaaattctaagattagagtctgtaaaagatc |
50340325 |
T |
|
| Q |
301 |
tgttgggccacatgttatcaaaccacttgggtggtctatgtcnnnnnnntaggtcacttgggtcacgctctataatgtcaagacataggtgttaagagtg |
400 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50340324 |
cgttgggccacatgttatcagaccacttgggtggtctatgtcaaaaaaataggtcacttgggtcacgctctataatgtcaagacataggtgttaagagtg |
50340225 |
T |
|
| Q |
401 |
tgtgttgaaagt |
412 |
Q |
| |
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|||||||||||| |
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| T |
50340224 |
tgtgttgaaagt |
50340213 |
T |
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