View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1542_high_15 (Length: 265)
Name: NF1542_high_15
Description: NF1542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1542_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 30810398 - 30810143
Alignment:
| Q |
1 |
gaatcaaacaaaaggatgaaatcaaagaaattcaaaaccctaactagcgaagaacgaatcaagagagaaagaagaagattcggttagggtttcgaaacac |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30810398 |
gaatcaaacaaaagaatgaaatcaaagaaattcaaaaccctaactagcgaagaacgaatcaagagagaaagaagaagattcggttagggtttcgaaacac |
30810299 |
T |
|
| Q |
101 |
gatttacctttgggttccgatcaaatctaactttctcttgtagaaattgtgaagtttctctctattgaatctacacaggtgtacgacaacggtgggttcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30810298 |
gatttacctttgggttccgatcaaatctaactttctcttgtagaaattgtgaagtttctctctattgaatctacacaggtgtacgacaacggtgggttcg |
30810199 |
T |
|
| Q |
201 |
tgagcgatcgtggacttagttacacatttgggggttgcgtaactcagaagtattat |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30810198 |
tgagcgatcgtggacttagttacacatttgggggttgcgtaactcagaagtattat |
30810143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University